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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90449 (48 seq.)
>W1710868583
LMJE01000009
Alphaproteobacteria
Rhizobium sp. Root274 [LMJE]
61462
61547
+
Leu
TAA
[ENA]
¡û
>W1711384917
MEDN01000008
Alphaproteobacteria
Agrobacterium sp. SCN 61-19 [MEDN]
136953
136868
-
Leu
TAA
[ENA]
¡û
>W1711502390
MKSQ01000017
Alphaproteobacteria
Bosea sp. 67-29 [MKSQ]
46284
46369
+
Leu
TAA
[ENA]
¡û
>W1711606251
MOOY01000001
Alphaproteobacteria
Pararhizobium arenae MIM27 [MOOY]
382240
382325
+
Leu
TAA
[ENA]
¡û
>C171050044
CP016499
Alphaproteobacteria
Agrobacterium sp. RAC06 [CP016499]
957855
957770
-
Leu
TAA
-
¡û
>W131036214
ALJF01000023
Alphaproteobacteria
Agrobacterium albertimagni AOL15 [ALJF]
267387
267302
-
Leu
TAA
[ENA]
¡û
>WENV181168246
OEIU01223826
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
45
130
+
Leu
TAA
[ENA]
¡û
>WENV183734429
PJTZ01007242
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
1103
1188
+
Leu
TAA
[ENA]
¡û
>WENV170667995
LADL02000049
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
7712
7797
+
Leu
TAA
[ENA]
¡û
>WENV170680951
LFEF01037958
[LFEF] freshwater metagenome; waterbloom
44454
44369
-
Leu
TAA
[ENA]
¡û
>WENV171003588
NNBU01000606
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
8921
8836
-
Leu
TAA
[ENA]
¡û
>C181051596
CP021371
Alphaproteobacteria
Rhizobium sp. ACO-34A [CP021371]
2043420
2043337
-
Leu
TAA
-
¡û
>C181075724
CP023063
Alphaproteobacteria
Sinorhizobium sp. CCBAU 05631 [CP023063]
1413069
1413154
+
Leu
TAA
-
¡û
>C181099200
CP024307
Alphaproteobacteria
Sinorhizobium fredii NXT3 [CP024307]
1846446
1846531
+
Leu
TAA
-
¡û
>W1910636516
LODU01000025
Alphaproteobacteria
Sinorhizobium americanum FG01 [LODU]
72428
72513
+
Leu
TAA
[ENA]
¡û
>W1910636573
LODV01000012
Alphaproteobacteria
Sinorhizobium americanum NG07B [LODV]
1747870
1747785
-
Leu
TAA
[ENA]
¡û
>C09108769
CP001389
Alphaproteobacteria
Sinorhizobium fredii NGR234 [CP001389]
1529928
1530013
+
Leu
TAA
[Ensembl]
¡û
>W1910658174
MBFK01000006
Alphaproteobacteria
Ensifer sp. CCBAU 251167 [MBFK]
89096
89181
+
Leu
TAA
[ENA]
¡û
>W1911409738
NWTD01000001
Alphaproteobacteria
Sinorhizobium sp. NG07B [NWTD]
1747870
1747785
-
Leu
TAA
[ENA]
¡û
>W2010105541
BJZP01000031
Alphaproteobacteria
Rhizobium naphthalenivorans NBRC 107585 [BJZP]
1096
1011
-
Leu
TAA
[ENA]
¡û
>W2010435511
JAAALD010000002
Alphaproteobacteria
Rhizobium sp. CRIBSB [JAAALD]
349807
349722
-
Leu
TAA
[ENA]
¡û
>W2010493772
JAAKZH010000003
Alphaproteobacteria
Rhizobium daejeonense CCBAU10050 [JAAKZH]
456524
456609
+
Leu
TAA
[ENA]
¡û
>W2010700616
JACHGA010000014
Alphaproteobacteria
Rhizobium rosettiformans DSM 26376 [JACHGA]
54888
54973
+
Leu
TAA
[ENA]
¡û
>W2010727721
JACIGA010000025
Alphaproteobacteria
Sinorhizobium terangae SEMIA 6460 [JACIGA]
40884
40799
-
Leu
TAA
[ENA]
¡û
>W2010783794
LODU01000025
Alphaproteobacteria
Sinorhizobium americanum FG01 [LODU]
72428
72513
+
Leu
TAA
[ENA]
¡û
>W2010783851
LODV01000012
Alphaproteobacteria
Sinorhizobium americanum NG07B [LODV]
1747870
1747785
-
Leu
TAA
[ENA]
¡û
>W2010804805
MBFK01000006
Alphaproteobacteria
Ensifer sp. CCBAU 251167 [MBFK]
89096
89181
+
Leu
TAA
[ENA]
¡û
>W2011136462
NWTB01000003
Alphaproteobacteria
Sinorhizobium sp. FG01 [NWTB]
72428
72513
+
Leu
TAA
[ENA]
¡û
>W2011136576
NWTD01000001
Alphaproteobacteria
Sinorhizobium sp. NG07B [NWTD]
1747870
1747785
-
Leu
TAA
[ENA]
¡û
>W2011695315
STGU01000015
Alphaproteobacteria
Rhizobium rosettiformans W3 [STGU]
26276
26191
-
Leu
TAA
[ENA]
¡û
>W2011811020
UEYP01000004
Alphaproteobacteria
Rhizobium selenitireducens ATCC BAA-1503 [UEYP]
349109
349024
-
Leu
TAA
[ENA]
¡û
>W2011811069
UEYQ01000006
Alphaproteobacteria
Rhizobium naphthalenivorans [UEYQ]
17451
17536
+
Leu
TAA
[ENA]
¡û
>W2012341037
WITC01000084
Alphaproteobacteria
Sinorhizobium terangae USDA4894 [WITC]
4631
4716
+
Leu
TAA
[ENA]
¡û
>W2110234685
JACLAL010000005
Alphaproteobacteria
Rhizobium daejeonense L61 [JACLAL]
67379
67294
-
Leu
TAA
[ENA]
¡û
>W2110534859
JAGFPK010000001
Alphaproteobacteria
Ciceribacter sp. L1K22 [JAGFPK]
1898843
1898928
+
Leu
TAA
[ENA]
¡û
>W2110568405
JAGRRC010000001
Alphaproteobacteria
Ciceribacter sp. L1K23 [JAGRRC]
1959669
1959584
-
Leu
TAA
[ENA]
¡û
>C201168580
CP045854
Alphaproteobacteria
Agrobacterium sp. MA01 [CP045854]
1521271
1521356
+
Leu
TAA
-
¡û
>C211040080
CP032405
Alphaproteobacteria
Rhizobium rosettiformans MAE2-X [CP032405]
3271569
3271654
+
Leu
TAA
-
¡û
>C241129164
CP048427
Alphaproteobacteria
Rhizobium daejeonense KACC 13094 [CP048427]
3874202
3874117
-
Leu
TAA
-
¡û
>C241245100
CP121659
Alphaproteobacteria
Sinorhizobium terangae CB3126 [CP121659]
1334836
1334921
+
Leu
TAA
-
¡û
>W2310025089
BSOI01000034
Alphaproteobacteria
Ciceribacter naphthalenivorans NBRC 107585 [BSOI]
41233
41318
+
Leu
TAA
[ENA]
¡û
>W2310026736
BSPT01000034
Alphaproteobacteria
Sphingomonas psychrolutea NBRC 109639 [BSPT]
41233
41318
+
Leu
TAA
[ENA]
¡û
>C161070700
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
1944794
1944709
-
Leu
TAA
[Ensembl]
¡û
>W121066396
AJQU01000075
Alphaproteobacteria
Sinorhizobium sp. CCBAU 05631 [AJQU]
69723
69808
+
Leu
TAA
[ENA]
¡û
>W1610649477
LJIB01000022
Alphaproteobacteria
Rhizobium sp. AAP116 [LJIB]
16255
16340
+
Leu
TAA
[ENA]
¡û
>W1610723878
LMDR01000009
Alphaproteobacteria
Rhizobium sp. Root1240 [LMDR]
61563
61648
+
Leu
TAA
[ENA]
¡û
>W1610730929
LMJE01000009
Alphaproteobacteria
Rhizobium sp. Root274 [LMJE]
61462
61547
+
Leu
TAA
[ENA]
¡û
>W1710596545
FTMQ01000003
Alphaproteobacteria
Rhizobium sp. RU33A [FTMQ]
615569
615654
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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