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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90471 (96 seq.)
>W131010454
AHYM01000014
Bacillota
Lactococcus garvieae ATCC 49156 [AHYM]
23811
23895
+
Leu
CAG
[ENA]
¡û
>W131037516
AMFD01000010
Bacillota
Lactococcus garvieae I113 [AMFD]
53409
53325
-
Leu
CAG
[ENA]
¡û
>W131037559
AMFE01000031
Bacillota
Lactococcus garvieae Tac2 [AMFE]
48556
48472
-
Leu
CAG
[ENA]
¡û
>W131044514
AMQS01000027
Bacillota
Lactococcus garvieae DCC43 [AMQS]
23483
23567
+
Leu
CAG
[ENA]
¡û
>W1711006272
LQOE01000105
Bacillota
Lactococcus sp. DD01 [LQOE]
51754
51838
+
Leu
CAG
[ENA]
¡û
>W1711228333
LXWL01000011
Bacillota
Lactococcus garvieae [LXWL]
53721
53637
-
Leu
CAG
[ENA]
¡û
>W131202432
ASWT01000004
Bacillota
Lactococcus garvieae ATCC 49156 [ASWT]
24211
24295
+
Leu
CAG
[ENA]
¡û
>W1711744883
MUIZ01000007
Bacillota
Lactococcus petauri 159469 [MUIZ]
23859
23943
+
Leu
CAG
[ENA]
¡û
>W1711942784
NBBK01000012
Bacillota
Lactococcus garvieae [NBBK]
24671
24755
+
Leu
CAG
[ENA]
¡û
>WENV180182176
OAWO01001111
[OAWO] human gut metagenome; faeces
3276
3192
-
Leu
CAG
[ENA]
¡û
>WENV180455168
OBXO01000471
[OBXO] human gut metagenome; faeces
6339
6423
+
Leu
CAG
[ENA]
¡û
>W141096231
AVFE01000026
Bacillota
Lactococcus garvieae TRF1 [AVFE]
9044
8960
-
Leu
CAG
[ENA]
¡û
>W141238093
BBJW01000015
Bacillota
Lactococcus garvieae NBRC 100934 [BBJW]
51984
51900
-
Leu
CAG
[ENA]
¡û
>WENV182518175
OIWP01000262
[OIWP] human gut metagenome; faeces
31167
31251
+
Leu
CAG
[ENA]
¡û
>WENV182619504
OJKH01013202
[OJKH] metagenome; faeces
313
229
-
Leu
CAG
[ENA]
¡û
>WENV183276712
OLRZ01021035
[OLRZ] human gut metagenome; faeces
969
885
-
Leu
CAG
[ENA]
¡û
>WENV183511568
OMJG01000794
[OMJG] food metagenome; Cotija cheese
19374
19458
+
Leu
CAG
[ENA]
¡û
>WENV170547750
CXTS01000090
[CXTS] Human gut metagenome genome assembly, contig: mD5_contig000819.; ENVO:feces
3835
3919
+
Leu
CAG
[ENA]
¡û
>WENV170548301
CXUD01000280
[CXUD] Human gut metagenome genome assembly, contig: mA2_contig002203.; ENVO:feces
1607
1523
-
Leu
CAG
[ENA]
¡û
>WENV170549737
CXVH01001888
[CXVH] Human gut metagenome genome assembly, contig: mE6_contig003933.; ENVO:feces
475
391
-
Leu
CAG
[ENA]
¡û
>WENV170549761
CXVH01002805
[CXVH] Human gut metagenome genome assembly, contig: mE6_contig003933.; ENVO:feces
95
11
-
Leu
CAG
[ENA]
¡û
>WENV170549772
CXVI01000181
[CXVI] Human gut metagenome genome assembly, contig: mF4_contig002506.; ENVO:feces
428
344
-
Leu
CAG
[ENA]
¡û
>WENV170549812
CXVI01001397
[CXVI] Human gut metagenome genome assembly, contig: mF4_contig002506.; ENVO:feces
489
405
-
Leu
CAG
[ENA]
¡û
>C181001700
AP017373
Bacillota
Lactococcus formosensis 122061 [AP017373]
1264121
1264205
+
Leu
CAG
-
¡û
>C191044530
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
1911268
1911184
-
Leu
CAG
-
¡û
>W1910583245
JXJV01000010
Bacillota
Lactococcus garvieae DSM 20684 [JXJV]
19748
19832
+
Leu
CAG
[ENA]
¡û
>W1910641547
LTDA01000001
Bacillota
Lactococcus garvieae KS1546 [LTDA]
53748
53664
-
Leu
CAG
[ENA]
¡û
>W1810907567
QVHV01000007
Bacillota
Lactococcus petauri AM13-9 [QVHV]
56700
56784
+
Leu
CAG
[ENA]
¡û
>W2010145342
BLXU01000011
Bacillota
Lactococcus garvieae lg38 [BLXU]
52106
52022
-
Leu
CAG
[ENA]
¡û
>W2010259184
CABJEF020000007
Bacillota
Lactococcus garvieae [CABJEF]
56700
56784
+
Leu
CAG
[ENA]
¡û
>W2010632768
JABTTD010000007
Bacillota
Lactococcus petauri LZys1 [JABTTD]
53748
53664
-
Leu
CAG
[ENA]
¡û
>W2010762963
JXJV01000010
Bacillota
Lactococcus garvieae DSM 20684 [JXJV]
19748
19832
+
Leu
CAG
[ENA]
¡û
>W2010786173
LTDA01000001
Bacillota
Lactococcus garvieae KS1546 [LTDA]
53748
53664
-
Leu
CAG
[ENA]
¡û
>W2011490919
RSFD01000025
Bacillota
Lactococcus garvieae RTCLI04 [RSFD]
23847
23931
+
Leu
CAG
[ENA]
¡û
>W2011543972
SDHG01000007
Bacillota
Lactococcus petauri DB43829 [SDHG]
76979
76895
-
Leu
CAG
[ENA]
¡û
>W2011544024
SDHH01000008
Bacillota
Lactococcus garvieae TILSE6 [SDHH]
50965
50881
-
Leu
CAG
[ENA]
¡û
>W2011544080
SDHI01000004
Bacillota
Lactococcus petauri DB22928 [SDHI]
55283
55199
-
Leu
CAG
[ENA]
¡û
>W2011544105
SDHJ01000009
Bacillota
Lactococcus garvieae DB24910 [SDHJ]
21167
21251
+
Leu
CAG
[ENA]
¡û
>W2011544158
SDHK01000009
Bacillota
Lactococcus petauri DB44798 [SDHK]
23887
23971
+
Leu
CAG
[ENA]
¡û
>W2011544218
SDHL01000008
Bacillota
Lactococcus petauri FISH1 [SDHL]
53701
53617
-
Leu
CAG
[ENA]
¡û
>W2011544269
SDHM01000009
Bacillota
Lactococcus petauri GRT2 [SDHM]
55239
55155
-
Leu
CAG
[ENA]
¡û
>W2011544319
SDHN01000008
Bacillota
Lactococcus garvieae CT2 [SDHN]
21168
21252
+
Leu
CAG
[ENA]
¡û
>W2011544378
SDHO01000011
Bacillota
Lactococcus garvieae FISHB [SDHO]
29503
29587
+
Leu
CAG
[ENA]
¡û
>W2011544423
SDHP01000009
Bacillota
Lactococcus garvieae TILSE2 [SDHP]
23884
23968
+
Leu
CAG
[ENA]
¡û
>W2011544456
SDHQ01000011
Bacillota
Lactococcus garvieae DM12426 [SDHQ]
49288
49204
-
Leu
CAG
[ENA]
¡û
>W2011602746
SIVY01000043
Bacillota
Lactococcus petauri LG_SAV_20 [SIVY]
53780
53696
-
Leu
CAG
[ENA]
¡û
>W2012206285
VXKD01000042
Bacillota
Lactococcus garvieae subsp. garvieae CCUG 32208T [VXKD]
52108
52024
-
Leu
CAG
[ENA]
¡û
>W2110068682
BOVO01000015
Bacillota
Lactococcus garvieae subsp. bovis LMG 30663 [BOVO]
18410
18494
+
Leu
CAG
[ENA]
¡û
>W2110068738
BOVP01000008
Bacillota
Lactococcus formosensis NBRC 109475 [BOVP]
55379
55295
-
Leu
CAG
[ENA]
¡û
>W2110344972
JADMXE010000007
Bacillota
Lactococcus garvieae 1001287H_170206_H11 [JADMXE]
23850
23934
+
Leu
CAG
[ENA]
¡û
>W2110369022
JADPGL010000007
Bacillota
Lactococcus petauri 1001095IJ_161003_C7 [JADPGL]
32420
32504
+
Leu
CAG
[ENA]
¡û
>W2110369594
JADPHA010000008
Bacillota
Lactococcus petauri 1001713B170214_170313_F10 [JADPHA]
53701
53617
-
Leu
CAG
[ENA]
¡û
>W2110437330
JAEOAS010000009
Bacillota
Lactococcus petauri H10 [JAEOAS]
53552
53468
-
Leu
CAG
[ENA]
¡û
>W2110583801
JAGYXD010000009
Bacillota
Lactococcus garvieae INF126 [JAGYXD]
23898
23982
+
Leu
CAG
[ENA]
¡û
>W2110583837
JAGYXE010000004
Bacillota
Lactococcus petauri INF110 [JAGYXE]
53633
53549
-
Leu
CAG
[ENA]
¡û
>C211210899
CP065637
Bacillota
Lactococcus garvieae FDAARGOS_929 [CP065637]
395252
395336
+
Leu
CAG
-
¡û
>C211212721
CP065691
Bacillota
Lactococcus garvieae FDAARGOS_893 [CP065691]
1707137
1707053
-
Leu
CAG
-
¡û
>C211219703
CP066003
Bacillota
Lactococcus garvieae FDAARGOS_1002 [CP066003]
1050253
1050337
+
Leu
CAG
-
¡û
>C211221983
CP066074
Bacillota
Lactococcus garvieae FDAARGOS_1062 [CP066074]
1947006
1946922
-
Leu
CAG
-
¡û
>C211222281
CP066087
Bacillota
Lactococcus garvieae FDAARGOS_1063 [CP066087]
1157692
1157776
+
Leu
CAG
-
¡û
>C211289038
CP071285
Bacillota
Lactococcus garvieae LG728 [CP071285]
1906674
1906590
-
Leu
CAG
-
¡û
>C211289097
CP071290
Bacillota
Lactococcus garvieae LG791 [CP071290]
1851347
1851263
-
Leu
CAG
-
¡û
>C211289155
CP071293
Bacillota
Lactococcus sp. LG1074 [CP071293]
1941913
1941829
-
Leu
CAG
-
¡û
>C211289218
CP071295
Bacillota
Lactococcus sp. LG1267 [CP071295]
397531
397447
-
Leu
CAG
-
¡û
>C211289272
CP071300
Bacillota
Lactococcus sp. LG592 [CP071300]
2065492
2065408
-
Leu
CAG
-
¡û
>C211289334
CP071301
Bacillota
Lactococcus sp. LG606 [CP071301]
1688892
1688808
-
Leu
CAG
-
¡û
>C211408053
CP084377
Bacillota
Lactococcus garvieae Lg-Granada [CP084377]
1627654
1627738
+
Leu
CAG
-
¡û
>C231024841
AP026069
Bacillota
Lactococcus garvieae MS210922A [AP026069]
1945372
1945288
-
Leu
CAG
-
¡û
>C231034139
CP028386
Bacillota
Lactococcus garvieae IBB3403 [CP028386]
2124888
2124804
-
Leu
CAG
-
¡û
>W1510060202
CCXC01000001
Bacillota
Lactococcus garvieae M14 [CCXC]
1198210
1198294
+
Leu
CAG
[ENA]
¡û
>W1510060319
CCXF01000001
Bacillota
Lactococcus garvieae MT14 [CCXF]
1198210
1198294
+
Leu
CAG
[ENA]
¡û
>C231227688
CP086394
Bacillota
Lactococcus garvieae subsp. garvieae B18 [CP086394]
1979962
1979878
-
Leu
CAG
-
¡û
>C231227747
CP086395
Bacillota
Lactococcus formosensis I4/6O [CP086395]
2282190
2282106
-
Leu
CAG
-
¡û
>C231227807
CP086401
Bacillota
Lactococcus petauri LG4 [CP086401]
2396640
2396556
-
Leu
CAG
-
¡û
>C231230525
CP086595
Bacillota
Lactococcus petauri LG26 [CP086595]
2546900
2546816
-
Leu
CAG
-
¡û
>C231353080
CP094882
Bacillota
Lactococcus petauri B1726 [CP094882]
2043867
2043783
-
Leu
CAG
-
¡û
>W2110761232
QSNN01000008
Bacillota
Lactococcus petauri RJAA.1 [QSNN]
23747
23831
+
Leu
CAG
[ENA]
¡û
>C231519401
CP109635
Bacillota
Lactococcus garvieae Alexii-11_2 [CP109635]
1927389
1927305
-
Leu
CAG
-
¡û
>C231519453
CP109636
Bacillota
Lactococcus garvieae Alexii-6_2 [CP109636]
1925516
1925432
-
Leu
CAG
-
¡û
>C231628000
CP120417
Bacillota
Lactococcus sp. bn62 [CP120417]
2081966
2081882
-
Leu
CAG
-
¡û
>W2110783072
WIVG01000011
Bacillota
Lactococcus garvieae EP01 [WIVG]
25007
24923
-
Leu
CAG
[ENA]
¡û
>C241103681
CP045924
Bacillota
Lactococcus petauri CF11 [CP045924]
1942986
1942902
-
Leu
CAG
-
¡û
>C241278502
CP127854
Bacillota
Lactococcus petauri GB97 [CP127854]
2334740
2334656
-
Leu
CAG
-
¡û
>C242000055
AP027275
Bacillota
Lactococcus formosensis MS200408A [AP027275]
1936551
1936467
-
Leu
CAG
-
¡û
>C11112700
AP009332
Bacillota
Lactococcus garvieae ATCC 49156 [AP009332]
1895473
1895389
-
Leu
CAG
[Ensembl]
¡û
>C11112760
AP009333
Bacillota
Lactococcus garvieae Lg2 [AP009333]
1909302
1909218
-
Leu
CAG
[Ensembl]
¡û
>W1511314676
JPUJ01000008
Bacillota
Lactococcus garvieae Lg-ilsanpaik-gs201105 [JPUJ]
53590
53506
-
Leu
CAG
[ENA]
¡û
>W11157437
AFCC01000004
Bacillota
Lactococcus garvieae 21881 [AFCC]
23730
23814
+
Leu
CAG
[ENA]
¡û
>W11157525
AFCD01000079
Bacillota
Lactococcus garvieae 8831 [AFCD]
23722
23806
+
Leu
CAG
[ENA]
¡û
>W11162757
AFHF01000008
Bacillota
Lactococcus garvieae UNIUD074 [AFHF]
27899
27983
+
Leu
CAG
[ENA]
¡û
>W121016360
AGQX01000053
Bacillota
Lactococcus garvieae TB25 [AGQX]
20513
20597
+
Leu
CAG
[ENA]
¡û
>W121016392
AGQY01000012
Bacillota
Lactococcus garvieae LG9 [AGQY]
19802
19718
-
Leu
CAG
[ENA]
¡û
>W121081186
AKFO01000002
Bacillota
Lactococcus garvieae IPLA 31405 [AKFO]
23751
23835
+
Leu
CAG
[ENA]
¡û
>W1610856922
LQOE01000105
Bacillota
Lactococcus sp. DD01 [LQOE]
51754
51838
+
Leu
CAG
[ENA]
¡û
>W1611012250
LXWL01000011
Bacillota
Lactococcus garvieae [LXWL]
53721
53637
-
Leu
CAG
[ENA]
¡û
>W1710568179
FOTJ01000009
Bacillota
Lactococcus garvieae [FOTJ]
24059
24143
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK