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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90626 (28 seq.)
>W1710821467
LKTL01000006
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
109640
109725
+
Leu
GAG
[ENA]
¡û
>W1711273431
LZFV01000002
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
419393
419308
-
Leu
GAG
[ENA]
¡û
>W1711624609
MPHK01000023
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
55454
55539
+
Leu
GAG
[ENA]
¡û
>C171108606
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
3754157
3754072
-
Leu
GAG
-
¡û
>WENV170023595
BCQL01000202
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
9517
9602
+
Leu
GAG
[ENA]
¡û
>C191130443
CP034759
Gammaproteobacteria
Litorilituus sediminis JCM 17549 [CP034759]
63444
63529
+
Leu
GAG
-
¡û
>C191148768
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
1303943
1303858
-
Leu
GAG
-
¡û
>W1910676770
MCTV01000068
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
54185
54270
+
Leu
GAG
[ENA]
¡û
>W1910676907
MCTY01000011
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
1440
1525
+
Leu
GAG
[ENA]
¡û
>W1910679494
MCVG01000105
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
110
25
-
Leu
GAG
[ENA]
¡û
>W1910679666
MCVI01000021
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
156494
156409
-
Leu
GAG
[ENA]
¡û
>W1911710106
QPQU01000005
Gammaproteobacteria
Shewanella pacifica KCTC 12235 [QPQU]
171060
171145
+
Leu
GAG
[ENA]
¡û
>W1911770219
QXIO01000005
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
226062
226147
+
Leu
GAG
[ENA]
¡û
>W2010473896
JAAIKQ010000001
Gammaproteobacteria
Shewanella sp. WXL01 [JAAIKQ]
884180
884265
+
Leu
GAG
[ENA]
¡û
>W2010810500
MCTV01000068
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
54185
54270
+
Leu
GAG
[ENA]
¡û
>W2010810638
MCTY01000011
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
1440
1525
+
Leu
GAG
[ENA]
¡û
>W2010813229
MCVG01000105
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
110
25
-
Leu
GAG
[ENA]
¡û
>W2010813401
MCVI01000021
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
156494
156409
-
Leu
GAG
[ENA]
¡û
>W2011284584
QPQU01000005
Gammaproteobacteria
Shewanella pacifica KCTC 12235 [QPQU]
171060
171145
+
Leu
GAG
[ENA]
¡û
>W2011327558
QXIO01000005
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
226062
226147
+
Leu
GAG
[ENA]
¡û
>W2011528037
SAWY01000021
Gammaproteobacteria
Litorilituus sp. RZ04 [SAWY]
85172
85087
-
Leu
GAG
[ENA]
¡û
>W2012350732
WJHV01000001
Gammaproteobacteria
Shewanella sp. XMDDZSB0408 [WJHV]
646258
646173
-
Leu
GAG
[ENA]
¡û
>W2110143154
JAAIKR010000001
Gammaproteobacteria
Shewanella intestini MCCC 1A01895 [JAAIKR]
102433
102518
+
Leu
GAG
[ENA]
¡û
>W2110556820
JAGJDZ010000004
Gammaproteobacteria
Shewanella sp. MMG014 [JAGJDZ]
207474
207559
+
Leu
GAG
[ENA]
¡û
>C211156633
CP062058
Gammaproteobacteria
Shewanella sp. WPAGA9 [CP062058]
3093451
3093366
-
Leu
GAG
-
¡û
>C241061752
CP041783
Gammaproteobacteria
Shewanella donghaensis LT17 [CP041783]
1986530
1986445
-
Leu
GAG
-
¡û
>W1610685429
LKTL01000006
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
109640
109725
+
Leu
GAG
[ENA]
¡û
>W1611032780
LZFV01000002
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
419393
419308
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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