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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90890 (41 seq.)
>W131223239
AUBY01000003
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
361091
361176
+
Leu
GAG
[ENA]
¡û
>W131223309
AUBZ01000009
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
118986
119071
+
Leu
GAG
[ENA]
¡û
>W131225177
AUDJ01000007
Gammaproteobacteria
Ferrimonas kyonanensis DSM 18153 [AUDJ]
95097
95012
-
Leu
GAG
[ENA]
¡û
>W131228991
AUGL01000007
Gammaproteobacteria
Ferrimonas futtsuensis DSM 18154 [AUGL]
15909
15824
-
Leu
GAG
[ENA]
¡û
>W131241506
BARX01000018
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
27154
27069
-
Leu
GAG
[ENA]
¡û
>W1711381994
MEBQ01000017
Gammaproteobacteria
Salinivibrio sp. BNH [MEBQ]
78197
78282
+
Leu
GAG
[ENA]
¡û
>W1711741019
MUEK01000012
Gammaproteobacteria
Salinivibrio kushneri AL184 [MUEK]
25333
25248
-
Leu
GAG
[ENA]
¡û
>W1711741070
MUEL01000003
Gammaproteobacteria
Salinivibrio kushneri ML277 [MUEL]
79121
79206
+
Leu
GAG
[ENA]
¡û
>W1711741182
MUEM01000010
Gammaproteobacteria
Salinivibrio kushneri IB560 [MUEM]
35355
35440
+
Leu
GAG
[ENA]
¡û
>W1711741361
MUEO01000023
Gammaproteobacteria
Salinivibrio kushneri IC202 [MUEO]
12419
12334
-
Leu
GAG
[ENA]
¡û
>W1711741432
MUEP01000096
Gammaproteobacteria
Salinivibrio kushneri IC317 [MUEP]
12650
12735
+
Leu
GAG
[ENA]
¡û
>W1711741501
MUEQ01000018
Gammaproteobacteria
Salinivibrio kushneri ML318 [MUEQ]
35279
35364
+
Leu
GAG
[ENA]
¡û
>W1711741587
MUER01000019
Gammaproteobacteria
Salinivibrio kushneri MA421 [MUER]
38440
38525
+
Leu
GAG
[ENA]
¡û
>W1711741678
MUES01000021
Gammaproteobacteria
Salinivibrio sp. ML323 [MUES]
11912
11827
-
Leu
GAG
[ENA]
¡û
>W1711741744
MUET01000018
Gammaproteobacteria
Salinivibrio sp. IB282 [MUET]
12304
12219
-
Leu
GAG
[ENA]
¡û
>W1711741831
MUEU01000014
Gammaproteobacteria
Salinivibrio kushneri ML328A [MUEU]
79226
79311
+
Leu
GAG
[ENA]
¡û
>W1711741918
MUEV01000014
Gammaproteobacteria
Salinivibrio kushneri ML331 [MUEV]
79090
79175
+
Leu
GAG
[ENA]
¡û
>W1712070484
NGNS01000020
Gammaproteobacteria
Neiella marina [NGNS]
45740
45825
+
Leu
GAG
[ENA]
¡û
>WENV170023857
BCQL01006244
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1065
1150
+
Leu
GAG
[ENA]
¡û
>C191174233
CP040021
Gammaproteobacteria
Salinivibrio kushneri AL184 [CP040021, CP040022]
2319956
2319871
-
Leu
GAG
-
¡û
>W1910506035
FYET01000013
Gammaproteobacteria
Salinivibrio costicola [FYET]
68507
68422
-
Leu
GAG
[ENA]
¡û
>W1810385640
PXUD01000027
Gammaproteobacteria
Salinivibrio sp. HTSP [PXUD]
190
105
-
Leu
GAG
[ENA]
¡û
>W1810758125
QPID01000013
Gammaproteobacteria
Corallincola holothuriorum C4 [QPID]
108595
108510
-
Leu
GAG
[ENA]
¡û
>W2010425724
FYET01000013
Gammaproteobacteria
Salinivibrio costicola [FYET]
68507
68422
-
Leu
GAG
[ENA]
¡û
>W2011580939
SHLY01000009
Gammaproteobacteria
Corallincola sp. 176GS2-150 [SHLY]
110328
110243
-
Leu
GAG
[ENA]
¡û
>W2011615232
SJXE01000001
Gammaproteobacteria
Corallincola sp. DASS28 [SJXE]
1133512
1133597
+
Leu
GAG
[ENA]
¡û
>W2011701865
SWCI01000004
Gammaproteobacteria
Ferrimonas sp. IMCC35001 [SWCI]
106358
106273
-
Leu
GAG
[ENA]
¡û
>W2011701970
SWCJ01000005
Gammaproteobacteria
Ferrimonas sp. IMCC35002 [SWCJ]
97154
97239
+
Leu
GAG
[ENA]
¡û
>W2011858144
UNRE01000002
Gammaproteobacteria
Agarivorans sp. Alg241-V36 [UNRE]
493396
493481
+
Leu
GAG
[ENA]
¡û
>W2012330151
WHRY01000001
Gammaproteobacteria
Agarivorans sp. B2Z047 [WHRY]
414145
414060
-
Leu
GAG
[ENA]
¡û
>W2110016232
BLPI01000001
Gammaproteobacteria
Agarivorans litoreus NBRC 110444 [BLPI]
3416603
3416688
+
Leu
GAG
[ENA]
¡û
>W2110020742
BMDX01000017
Gammaproteobacteria
Neiella marina CGMCC 1.10130 [BMDX]
45716
45801
+
Leu
GAG
[ENA]
¡û
>W2110283276
JACXAF010000021
Gammaproteobacteria
Neiella sp. HB171785 [JACXAF]
43570
43655
+
Leu
GAG
[ENA]
¡û
>C211007584
AP023032
Gammaproteobacteria
Agarivorans albus JCM 21469 [AP023032]
1321877
1321962
+
Leu
GAG
-
¡û
>C211007679
AP023033
Gammaproteobacteria
Agarivorans aestuarii KCTC 32543 [AP023033]
1326798
1326883
+
Leu
GAG
-
¡û
>C231127959
CP072679
Gammaproteobacteria
Ferrimonas sp. SCSIO 43195 [CP072679]
996410
996495
+
Leu
GAG
-
¡û
>C231249143
CP088080
Gammaproteobacteria
Agarivorans sp. B2Z047 [CP088080]
1757853
1757938
+
Leu
GAG
-
¡û
>C231561004
CP114586
Gammaproteobacteria
Salinivibrio kushneri TGB4 [CP114586]
2233999
2233914
-
Leu
GAG
-
¡û
>C231561195
CP114590
Gammaproteobacteria
Salinivibrio kushneri TGB19 [CP114590]
2312604
2312519
-
Leu
GAG
-
¡û
>C241011609
AP027368
Gammaproteobacteria
Ferrimonas sp. YFM [AP027368]
981835
981920
+
Leu
GAG
-
¡û
>W1710519078
FNEM01000004
Gammaproteobacteria
Ferrimonas sediminum [FNEM]
106573
106488
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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