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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.91122 (15 seq.)
>W1711135518
LUZB01000067
Bacteroidota
Bacteroidales bacterium Bact_10 [LUZB]
2763
2848
+
Tyr
GTA
[ENA]
¡û
>WENV180095201
MTBK01055210
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
637
552
-
Tyr
GTA
[ENA]
¡û
>WENV180096198
MTBK01116197
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
258
175
-
Tyr
GTA
[ENA]
¡û
>WENV180098434
MTBK01245089
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
32126
32041
-
Tyr
GTA
[ENA]
¡û
>WENV180347002
OBLN01493138
[OBLN] sediment metagenome; sediment
62
145
+
Tyr
GTA
[ENA]
¡û
>WENV170688984
LFRM01270745
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
10073
9988
-
Tyr
GTA
[ENA]
¡û
>WENV170719182
LSQX01104850
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
10524
10609
+
Tyr
GTA
[ENA]
¡û
>WENV170725361
LSQX01340446
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
42252
42337
+
Tyr
GTA
[ENA]
¡û
>WENV170726963
LSQX01400177
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
38813
38728
-
Tyr
GTA
[ENA]
¡û
>WENV170968583
MTKW01011722
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1683
1768
+
Tyr
GTA
[ENA]
¡û
>WENV170971007
MTKX01000943
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
85657
85574
-
Tyr
GTA
[ENA]
¡û
>WENV170975271
MTKZ01000030
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
117243
117326
+
Tyr
GTA
[ENA]
¡û
>W1610606502
LFSY01000094
Bacteroidota
Rikenellaceae bacterium DTU002 [LFSY]
10073
9988
-
Tyr
GTA
[ENA]
¡û
>W1610946638
LUZB01000067
Bacteroidota
Bacteroidales bacterium Bact_10 [LUZB]
2763
2848
+
Tyr
GTA
[ENA]
¡û
>W1710727789
LFSY01000094
Bacteroidota
Rikenellaceae bacterium DTU002 [LFSY]
10073
9988
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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