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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.91122 (19 seq.)
>WENV180566017
OCLH01035010
[OCLH] human gut metagenome; human gut
34
119
+
Leu
CAA
[ENA]
¢þ
>WENV180799019
ODJC01001566
[ODJC] human metagenome; G_DNA_Stool
11549
11634
+
Leu
CAA
[ENA]
¢þ
>WENV180994144
ODVQ01032872
[ODVQ] human metagenome; G_DNA_Stool
829
914
+
Leu
CAA
[ENA]
¢þ
>WENV181901981
OGXW01008497
[OGXW] human gut metagenome; faeces
2583
2668
+
Leu
CAA
[ENA]
¢þ
>WENV182042660
OHDN01013823
[OHDN] human gut metagenome; feces
1225
1310
+
Leu
CAA
[ENA]
¢þ
>WENV182054222
OHEJ01023417
[OHEJ] human gut metagenome; feces
408
493
+
Leu
CAA
[ENA]
¢þ
>WENV182200447
OHPL01000613
[OHPL] human gut metagenome; feces
10084
10169
+
Leu
CAA
[ENA]
¢þ
>WENV182608032
OJJU01077111
[OJJU] metagenome; faeces
290
205
-
Leu
CAA
[ENA]
¢þ
>WENV183198477
OLPV01001995
[OLPV] human gut metagenome; faeces
13735
13820
+
Leu
CAA
[ENA]
¢þ
>WENV183444413
OMCO01004386
[OMCO] human gut metagenome; feces
1146
1231
+
Leu
CAA
[ENA]
¢þ
>WENV183470508
OMEK01000234
[OMEK] human gut metagenome; feces
2578
2663
+
Leu
CAA
[ENA]
¢þ
>C181115555
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
1801984
1802069
+
Leu
CAA
-
¡û
>C191031558
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
1767125
1767210
+
Leu
CAA
-
¡û
>C191031613
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
1801910
1801995
+
Leu
CAA
-
¡û
>C191072224
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
1801980
1802065
+
Leu
CAA
-
¡û
>ENV09002513
ADGC01004022
Wallaby gut metagenome MeugComb_C1
569
654
+
Leu
CAA
[ENA]
¡û
>W10115307
ADJQ01000027
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
5405
5320
-
Leu
CAA
[ENA]
¡û
>C11108751
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
1801984
1802069
+
Leu
CAA
[Ensembl]
¡û
>W11118893
ADJQ01000027
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
5405
5320
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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