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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.91637 (43 seq.)
>W1710783824
LJFZ01000016
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
117569
117652
+
Leu
CAG
[ENA]
¡û
>W1710793191
LJPA01000001
Actinomycetota
Frankia sp. ACN1ag [LJPA]
48467
48384
-
Leu
CAG
[ENA]
¡û
>W1711053890
LRTJ01000005
Actinomycetota
Frankia casuarinae BR [LRTJ]
87023
87106
+
Leu
CAG
[ENA]
¡û
>W1711309648
MAQZ01000048
Actinomycetota
Frankia sp. CgIM4 [MAQZ]
147
64
-
Leu
CAG
[ENA]
¡û
>W1711328875
MBLN01000025
Actinomycetota
Pseudofrankia sp. EUN1h EUN1h [MBLN]
248260
248177
-
Leu
CAG
[ENA]
¡û
>W1711328976
MBLO01000259
Actinomycetota
Pseudofrankia sp. BMG5.36 BMG5.36 [MBLO]
47585
47502
-
Leu
CAG
[ENA]
¡û
>W1711612444
MOWP01000025
Actinomycetota
Frankia sp. CcI49 [MOWP]
142162
142077
-
Leu
CAG
[ENA]
¡û
>W1711678693
MRUJ01000120
Actinomycetota
Frankia sp. KB5 [MRUJ]
19998
19915
-
Leu
CAG
[ENA]
¡û
>W1711694640
MSIE01000008
Actinomycetota
Actinophytocola xanthii 11-183 [MSIE]
166146
166231
+
Leu
CAG
[ENA]
¡û
>W131164596
ARAX01000004
Actinomycetota
Sciscionella marina DSM 45152 [ARAX]
102156
102071
-
Leu
CAG
[ENA]
¡û
>W131228202
AUFT01000004
Actinomycetota
Nakamurella lactea DSM 19367 [AUFT]
69617
69534
-
Leu
CAG
[ENA]
¡û
>C000307
CP000481
Actinomycetota
Acidothermus cellulolyticus 11B 11B; ATCC 43068 [CP000481]
24698
24783
+
Leu
CAG
[Ensembl]
¡û
>WENV181163493
OEIQ01051397
[OEIQ] soil metagenome; soil
99
14
-
Leu
CAG
[ENA]
¢þ
>WENV183092728
OLLJ01000322
[OLLJ] soil metagenome; soil
86
3
-
Leu
CAG
[ENA]
¢þ
>WENV183093293
OLLX01000171
[OLLX] soil metagenome; soil
69969
69886
-
Leu
CAG
[ENA]
¢þ
>WENV183748796
PPFU01082283
[PPFU] hypolithon metagenome; Antarctic Hypolithon
619
702
+
Leu
CAG
[ENA]
¢þ
>WENV170024266
BCQL01035725
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
150
67
-
Leu
CAG
[ENA]
¢þ
>C181081498
CP023445
Actinomycetota
Actinosynnema pretiosum X47 [CP023445]
31186
31270
+
Leu
CAG
-
¡û
>C191064771
CP029607
Actinomycetota
Actinosynnema pretiosum subsp. pretiosum ATCC 31280 [CP029607]
31280
31365
+
Leu
CAG
-
¡û
>W09102690
AAIE01000003
Actinomycetota
Frankia casuarinae CcI3 [AAIE]
176831
176748
-
Leu
CAG
[ENA]
¡û
>W09108119
ABTA01000005
Actinomycetota
Actinosynnema mirum DSM 43827 [ABTA]
189147
189062
-
Leu
CAG
[ENA]
¡û
>W141757623
JNYA01000870
Actinomycetota
Actinosynnema pretiosum subsp. auranticum [JNYA]
822
907
+
Leu
CAG
[ENA]
¡û
>W141757977
JNYH01000292
Actinomycetota
Kutzneria albida [JNYH]
8443
8526
+
Leu
CAG
[ENA]
¡û
>W141758716
JNYU01000716
Actinomycetota
Umezawaea tangerina [JNYU]
617
702
+
Leu
CAG
[ENA]
¡û
>W141804369
JPHT01000001
Actinomycetota
Frankia sp. Allo2 [JPHT]
299966
300049
+
Leu
CAG
[ENA]
¡û
>C09100612
CP001630
Actinomycetota
Actinosynnema mirum DSM 43827 [CP001630]
31268
31353
+
Leu
CAG
[Ensembl]
¡û
>W1810364397
PVTF01000001
Actinomycetota
Umezawaea tangerina DSM 44720 [PVTF]
197652
197736
+
Leu
CAG
[ENA]
¡û
>W1810623461
QHCP01000006
Actinomycetota
Actinokineospora spheciospongiae CECT 8578 [QHCP]
237813
237896
+
Leu
CAG
[ENA]
¡û
>C151105052
LN850107
Actinomycetota
Alloactinosynnema sp. L-07 [LN850107]
5892251
5892334
+
Leu
CAG
-
¡û
>W10111534
ADDL01000008
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
121601
121684
+
Leu
CAG
[ENA]
¡û
>C11109188
CP002299
Actinomycetota
Pseudofrankia inefficax EuI1c [CP002299]
108174
108257
+
Leu
CAG
[Ensembl]
¡û
>W11114461
ADDL01000008
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
121601
121684
+
Leu
CAG
[ENA]
¡û
>W1511573819
LANG01000008
Actinomycetota
Pseudofrankia sp. DC12 DC12 [LANG]
823333
823250
-
Leu
CAG
[ENA]
¡û
>W1511697727
LGED01000001
Actinomycetota
Saccharothrix sp. NRRL B-16348 [LGED]
399849
399934
+
Leu
CAG
[ENA]
¡û
>W1610648332
LJFZ01000016
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
117569
117652
+
Leu
CAG
[ENA]
¡û
>W1610657195
LJPA01000001
Actinomycetota
Frankia sp. ACN1ag [LJPA]
48467
48384
-
Leu
CAG
[ENA]
¡û
>W1610895078
LRTJ01000005
Actinomycetota
Frankia casuarinae BR [LRTJ]
87023
87106
+
Leu
CAG
[ENA]
¡û
>W1710513215
FMZZ01000004
Actinomycetota
Actinokineospora iranica iranicum [FMZZ]
263657
263574
-
Leu
CAG
[ENA]
¡û
>W1710518182
FNDV01000015
Actinomycetota
Actinokineospora alba album [FNDV]
37550
37633
+
Leu
CAG
[ENA]
¡û
>W1710548990
FOEE01000011
Actinomycetota
Trujillella endophytica endophyticus [FOEE]
111044
111129
+
Leu
CAG
[ENA]
¡û
>W1710554096
FOIE01000007
Actinomycetota
Geodermatophilus poikilotrophus [FOIE]
201206
201289
+
Leu
CAG
[ENA]
¡û
>W1710572484
FOWS01000002
Actinomycetota
Saccharomonospora viridis [FOWS]
513225
513142
-
Leu
CAG
[ENA]
¡û
>W1710589966
FRAP01000012
Actinomycetota
Pseudonocardia thermophila [FRAP]
47298
47215
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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