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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.91683 (70 seq.)
>W1711511053
MLCB01000152
Alphaproteobacteria
Planktotalea frisia [MLCB]
25567
25482
-
Leu
CAA
[ENA]
¡û
>C171092095
CP019312
Alphaproteobacteria
Tateyamaria omphalii DOK1-4 [CP019312]
1206874
1206959
+
Leu
CAA
-
¡û
>WENV180105495
OAPD01074992
[OAPD] marine metagenome; 2010
240
155
-
Leu
CAA
[ENA]
¡û
>WENV180364836
OBOA01145172
[OBOA] marine metagenome; Deep Chlorophyll Maximum
91
6
-
Leu
CAA
[ENA]
¡û
>WENV180389558
OBPJ01044429
[OBPJ] marine metagenome; seawater
304
389
+
Leu
CAA
[ENA]
¡û
>WENV180389944
OBPK01005684
[OBPK] marine metagenome; Sterile flask
861
946
+
Leu
CAA
[ENA]
¡û
>WENV180392396
OBPO01060014
[OBPO] marine metagenome; seawater
311
226
-
Leu
CAA
[ENA]
¡û
>WENV180586087
OCOM01015414
[OCOM] marine metagenome; seawater
422
337
-
Leu
CAA
[ENA]
¡û
>WENV180587067
OCON01032970
[OCON] marine metagenome; seawater
206
291
+
Leu
CAA
[ENA]
¡û
>WENV180594717
OCPA01001946
[OCPA] marine metagenome; ENVO:00002010
959
1044
+
Leu
CAA
[ENA]
¡û
>WENV180595349
OCPD01008347
[OCPD] marine metagenome; Mesotrophic water
139
224
+
Leu
CAA
[ENA]
¡û
>WENV180688284
OCZA010078575
[OCZA] marine metagenome; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
51
136
+
Leu
CAA
[ENA]
¡û
>WENV181320792
OFKI01024490
[OFKI] marine metagenome; seawater
224
139
-
Leu
CAA
[ENA]
¡û
>WENV181385718
OFRJ01011615
[OFRJ] marine metagenome; seawater
435
520
+
Leu
CAA
[ENA]
¡û
>W141151415
AXBB01000001
Alphaproteobacteria
Phaeobacter inhibens DSM 16374 [AXBB]
832806
832891
+
Leu
CAA
[ENA]
¡û
>WENV182561027
OJDV01002233
[OJDV] seawater metagenome; Sea water
4290
4375
+
Leu
CAA
[ENA]
¡û
>WENV170163287
CEOM01116680
[CEOM] marine metagenome genome assembly TARA_004_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
171
256
+
Leu
CAA
[ENA]
¡û
>WENV170297181
CESE01117150
[CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
288
203
-
Leu
CAA
[ENA]
¡û
>WENV170605505
FUWD010496339
[FUWD] metagenome; unknown
92
7
-
Leu
CAA
[ENA]
¡û
>WENV170608557
FUWD011005878
[FUWD] metagenome; unknown
167
82
-
Leu
CAA
[ENA]
¡û
>C181008427
CP010588
Alphaproteobacteria
Phaeobacter gallaeciensis P11 [CP010588]
1746492
1746577
+
Leu
CAA
-
¡û
>C181008850
CP010636
Alphaproteobacteria
Phaeobacter gallaeciensis P73 [CP010636]
2159256
2159171
-
Leu
CAA
-
¡û
>C181008910
CP010643
Alphaproteobacteria
Phaeobacter piscinae P36 [CP010643]
1657510
1657425
-
Leu
CAA
-
¡û
>C181009172
CP010673
Alphaproteobacteria
Phaeobacter gallaeciensis P75 [CP010673]
1780744
1780829
+
Leu
CAA
-
¡û
>C181009253
CP010681
Alphaproteobacteria
Phaeobacter piscinae P14 [CP010681]
1635983
1635898
-
Leu
CAA
-
¡û
>C181009310
CP010689
Alphaproteobacteria
Phaeobacter piscinae P42 [CP010689]
1657510
1657425
-
Leu
CAA
-
¡û
>C181009367
CP010696
Alphaproteobacteria
Phaeobacter inhibens P24 [CP010696]
1738435
1738350
-
Leu
CAA
-
¡û
>C181009401
CP010705
Alphaproteobacteria
Phaeobacter inhibens P66 [CP010705]
1674982
1675067
+
Leu
CAA
-
¡û
>C181009540
CP010725
Alphaproteobacteria
Phaeobacter inhibens P88 [CP010725]
1770172
1770087
-
Leu
CAA
-
¡û
>C181009653
CP010741
Alphaproteobacteria
Phaeobacter inhibens P59 [CP010741]
1764891
1764806
-
Leu
CAA
-
¡û
>C181009710
CP010745
Alphaproteobacteria
Phaeobacter inhibens P48 [CP010745]
1758506
1758421
-
Leu
CAA
-
¡û
>C181009916
CP010784
Alphaproteobacteria
Phaeobacter gallaeciensis P63 [CP010784]
1745326
1745411
+
Leu
CAA
-
¡û
>C181009997
CP010805
Alphaproteobacteria
Phaeobacter piscinae P23 [CP010805]
1657510
1657425
-
Leu
CAA
-
¡û
>C191083223
CP031952
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP031952]
1782407
1782322
-
Leu
CAA
-
¡û
>C191083281
CP031956
Alphaproteobacteria
Phaeobacter sp. LSS9 [CP031956]
848179
848094
-
Leu
CAA
-
¡û
>C191103751
CP033219
Alphaproteobacteria
Parasedimentitalea marina W43 [CP033219]
2448101
2448016
-
Leu
CAA
-
¡û
>C141011179
CP006966
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [CP006966]
1748918
1749003
+
Leu
CAA
[Ensembl]
¡û
>W1911539268
OMPR01000009
Alphaproteobacteria
Rhodobacteraceae bacterium EL53 [OMPR]
101768
101853
+
Leu
CAA
[ENA]
¡û
>W1810063491
PDUV01000009
Alphaproteobacteria
Rhodobacteraceae bacterium 4F10 [PDUV]
145281
145366
+
Leu
CAA
[ENA]
¡û
>W2010409826
FWXB01000004
Alphaproteobacteria
Roseovarius aestuarii CECT 7745 [FWXB]
143555
143470
-
Leu
CAA
[ENA]
¡û
>W2011169543
OMPR01000009
Alphaproteobacteria
Rhodobacteraceae bacterium EL53 [OMPR]
101768
101853
+
Leu
CAA
[ENA]
¡û
>W2011626596
SLZU01000015
Alphaproteobacteria
Primorskyibacter sedentarius DSM 104836 [SLZU]
19553
19468
-
Leu
CAA
[ENA]
¡û
>W2011696400
SULI01000009
Alphaproteobacteria
Pelagicola litoralis CL-ES2 [SULI]
16349
16434
+
Leu
CAA
[ENA]
¡û
>W2011963150
VAUA01000012
Alphaproteobacteria
Pelagicola sp. DSW4-44 [VAUA]
44919
45004
+
Leu
CAA
[ENA]
¡û
>W2011970689
VCBA01000001
Alphaproteobacteria
Tateyamaria sp. syn59 [VCBA]
423303
423388
+
Leu
CAA
[ENA]
¡û
>W2012235316
WBXX01000009
Alphaproteobacteria
Aliiroseovarius sp. xm-m-339-2 [WBXX]
41817
41902
+
Leu
CAA
[ENA]
¡û
>W2012235703
WBYF01000008
Alphaproteobacteria
Aliiroseovarius sp. xm-v-225 [WBYF]
52686
52771
+
Leu
CAA
[ENA]
¡û
>W2110046773
BMWT01000002
Alphaproteobacteria
Tateyamaria omphalii KCTC 12333 [BMWT]
155034
154949
-
Leu
CAA
[ENA]
¡û
>W2110240437
JACNMR010000005
Alphaproteobacteria
Phaeobacter sp. MR [JACNMR]
161791
161876
+
Leu
CAA
[ENA]
¡û
>W2110427063
JAELVR010000001
Alphaproteobacteria
Sedimentitalea sp. CAU 1593 [JAELVR]
466729
466814
+
Leu
CAA
[ENA]
¡û
>W2110532152
JAGEUF010000002
Alphaproteobacteria
Phaeobacter sp. HS011 [JAGEUF]
472629
472544
-
Leu
CAA
[ENA]
¡û
>W2110603347
JAHHIQ010000034
Alphaproteobacteria
Ruegeria litorea 5C01 [JAHHIQ]
93501
93416
-
Leu
CAA
[ENA]
¡û
>C231167800
CP080774
Alphaproteobacteria
Aliiroseovarius crassostreae S051 [CP080774]
1248937
1249022
+
Leu
CAA
-
¡û
>C231167898
CP080778
Alphaproteobacteria
Aliiroseovarius crassostreae S128 [CP080778]
1245343
1245428
+
Leu
CAA
-
¡û
>C231167947
CP080780
Alphaproteobacteria
Aliiroseovarius crassostreae S137 [CP080780]
1275340
1275425
+
Leu
CAA
-
¡û
>C231168026
CP080782
Alphaproteobacteria
Aliiroseovarius crassostreae S202 [CP080782]
1337375
1337290
-
Leu
CAA
-
¡û
>C231170005
CP081166
Alphaproteobacteria
Phaeobacter inhibens M619 [CP081166]
287879
287794
-
Leu
CAA
-
¡û
>C231170433
CP081216
Alphaproteobacteria
Phaeobacter inhibens M625 [CP081216]
1745143
1745058
-
Leu
CAA
-
¡û
>C231171060
CP081266
Alphaproteobacteria
Phaeobacter inhibens M644 [CP081266]
1742475
1742390
-
Leu
CAA
-
¡û
>W1511388750
JSWJ01000003
Alphaproteobacteria
Phaeobacter sp. S60 [JSWJ]
498691
498606
-
Leu
CAA
[ENA]
¡û
>W1511518772
JXYH01000002
Alphaproteobacteria
Aestuariivita boseongensis BS-B2 [JXYH]
152428
152343
-
Leu
CAA
[ENA]
¡û
>C121003812
CP002972
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP002972]
1782345
1782260
-
Leu
CAA
[Ensembl]
¡û
>W1610016139
AOQA01000005
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
344546
344631
+
Leu
CAA
[ENA]
¡û
>W1610092799
CYSC01000007
Alphaproteobacteria
Thalassovita autumnalis mediterraneus [CYSC]
201880
201965
+
Leu
CAA
[ENA]
¡û
>W1610094586
CYTW01000001
Alphaproteobacteria
Shimia thalassica CECT 7735 [CYTW]
2059953
2059868
-
Leu
CAA
[ENA]
¡û
>W1610789473
LOHU01000072
Alphaproteobacteria
Phaeobacter inhibens [LOHU]
118312
118397
+
Leu
CAA
[ENA]
¡û
>W1710013030
AOQA01000005
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
344546
344631
+
Leu
CAA
[ENA]
¡û
>W1710096054
CYSC01000007
Alphaproteobacteria
Thalassovita autumnalis mediterraneus [CYSC]
201880
201965
+
Leu
CAA
[ENA]
¡û
>W1710588781
FQZQ01000006
Alphaproteobacteria
Shimia gijangensis [FQZQ]
70730
70645
-
Leu
CAA
[ENA]
¡û
>W1710598330
FTNX01000013
Alphaproteobacteria
Thalassovita mediterranea mediterraneus [FTNX]
50248
50333
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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