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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.91701 (15 seq.)
>W1711166838
LVVN01000001
Bacillota
Weissella halotolerans [LVVN]
322692
322610
-
Tyr
GTA
[ENA]
¡û
>W131215166
ATUU01000002
Bacillota
Weissella halotolerans DSM 20190 [ATUU]
333153
333071
-
Tyr
GTA
[ENA]
¡û
>W131055711
ANCA01000006
Bacillota
Weissella ceti NC36 [ANCA]
288897
288815
-
Tyr
GTA
[ENA]
¡û
>C181143187
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
740427
740342
-
Tyr
GTA
-
¡û
>C211059801
CP043431
Bacillota
Weissella koreensis SK [CP043431]
698088
698003
-
Tyr
GTA
-
¡û
>C241138600
CP049888
Bacillota
Weissella coleopterorum HDW19 [CP049888]
205265
205350
+
Tyr
GTA
-
¡û
>C241378302
CP144279
Bacillota
Weissella koreensis DMW12 [CP144279]
719343
719258
-
Tyr
GTA
-
¡û
>WENV11100290
AEKF01000023
Food metagenome, Jonggazip commercial cabbage kimchi
36248
36333
+
Tyr
GTA
[ENA]
¡û
>C11123771
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
690823
690738
-
Tyr
GTA
[Ensembl]
¡û
>W121082049
AKGG01000016
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
271968
271883
-
Tyr
GTA
[ENA]
¡û
>W1610528064
JQAX01000002
Bacillota
Weissella halotolerans DSM 20190 [JQAX]
79094
79176
+
Tyr
GTA
[ENA]
¡û
>W1610528866
JQBP01000007
Bacillota
Weissella kandleri [JQBP]
4593
4508
-
Tyr
GTA
[ENA]
¡û
>W1610977378
LVVN01000001
Bacillota
Weissella halotolerans [LVVN]
322692
322610
-
Tyr
GTA
[ENA]
¡û
>W1710629654
JQAX01000002
Bacillota
Weissella halotolerans DSM 20190 [JQAX]
79094
79176
+
Tyr
GTA
[ENA]
¡û
>W1710630456
JQBP01000007
Bacillota
Weissella kandleri [JQBP]
4593
4508
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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