This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.9243 (61 seq.)
>W1711167348
LVWH01000043
Bacillota
Paenibacillus sp. P3E [LVWH]
514
605
+
Ser
GGA
[ENA]
¡û
>W1711167362
LVWH01000094
Bacillota
Paenibacillus sp. P3E [LVWH]
434
526
+
Ser
GGA
[ENA]
¡û
>W1711169304
LVYZ01000005
Bacillota
Paenibacillus sp. P46E [LVYZ]
404
312
-
Ser
GGA
[ENA]
¡û
>W1711169309
LVYZ01000009
Bacillota
Paenibacillus sp. P46E [LVYZ]
404
312
-
Ser
GGA
[ENA]
¡û
>W1711499521
MKQK01000001
Bacillota
Paenibacillus odorifer [MKQK]
99
7
-
Ser
GGA
[ENA]
¡û
>W1711499596
MKQL01000009
Bacillota
Paenibacillus odorifer [MKQL]
12
104
+
Ser
GGA
[ENA]
¡û
>W1711499648
MKQL01000064
Bacillota
Paenibacillus odorifer [MKQL]
306
398
+
Ser
GGA
[ENA]
¡û
>W1711632858
MPTC01000078
Bacillota
Paenibacillus odorifer [MPTC]
376
284
-
Ser
GGA
[ENA]
¡û
>W1711632867
MPTC01000081
Bacillota
Paenibacillus odorifer [MPTC]
577
485
-
Ser
GGA
[ENA]
¡û
>W1711632927
MPTD01000061
Bacillota
Paenibacillus odorifer [MPTD]
268
176
-
Ser
GGA
[ENA]
¡û
>W1711633001
MPTE01000077
Bacillota
Paenibacillus odorifer [MPTE]
316
408
+
Ser
GGA
[ENA]
¡û
>W1711633075
MPTF01000067
Bacillota
Paenibacillus odorifer [MPTF]
189
97
-
Ser
GGA
[ENA]
¡û
>W1711633255
MPTI01000075
Bacillota
Paenibacillus odorifer [MPTI]
320
412
+
Ser
GGA
[ENA]
¡û
>W1711633354
MPTK01000020
Bacillota
Paenibacillus odorifer [MPTK]
10
102
+
Ser
GGA
[ENA]
¡û
>W1711633412
MPTL01000039
Bacillota
Paenibacillus odorifer [MPTL]
58297
58205
-
Ser
GGA
[ENA]
¡û
>W1711633471
MPTM01000021
Bacillota
Paenibacillus odorifer [MPTM]
116364
116272
-
Ser
GGA
[ENA]
¡û
>W1711633654
MPTP01000008
Bacillota
Paenibacillus odorifer [MPTP]
229362
229270
-
Ser
GGA
[ENA]
¡û
>W1711634103
MPTV01000099
Bacillota
Paenibacillus odorifer [MPTV]
318
226
-
Ser
GGA
[ENA]
¡û
>W1711636611
MPVO01000004
Bacillota
Paenibacillus odorifer [MPVO]
510915
510823
-
Ser
GGA
[ENA]
¡û
>W1711636629
MPVO01000005
Bacillota
Paenibacillus odorifer [MPVO]
450829
450737
-
Ser
GGA
[ENA]
¡û
>W1711678098
MRTX01000083
Bacillota
Paenibacillus sp. FSL R7-0337 [MRTX]
188
279
+
Ser
GGA
[ENA]
¡û
>C171123198
CP021780
Bacillota
Paenibacillus donghaensis KCTC 13049 [CP021780]
8215733
8215825
+
Ser
GGA
-
¡û
>C171123229
CP021780
Bacillota
Paenibacillus donghaensis KCTC 13049 [CP021780]
5977411
5977319
-
Ser
GGA
-
¡û
>W131170144
ARFI01000003
Bacillota
Paenibacillus sp. HW567 [ARFI]
968
1060
+
Ser
GGA
[ENA]
¡û
>W131170176
ARFI01000006
Bacillota
Paenibacillus sp. HW567 [ARFI]
3372924
3372832
-
Ser
GGA
[ENA]
¡û
>W131176587
ARKE01000023
Bacillota
Paenibacillus daejeonensis DSM 15491 [ARKE]
446
538
+
Ser
GGA
[ENA]
¡û
>W141072563
ASPV01000093
Bacillota
Paenibacillus sp. FSL H8-237 [ASPV]
238
146
-
Ser
GGA
[ENA]
¡û
>W141072571
ASPV01000104
Bacillota
Paenibacillus sp. FSL H8-237 [ASPV]
306
398
+
Ser
GGA
[ENA]
¡û
>W141072724
ASPX01000074
Bacillota
Paenibacillus sp. FSL R7-277 [ASPX]
83
174
+
Ser
GGA
[ENA]
¡û
>W141080299
ATMT01000022
Bacillota
Paenibacillus alvei TS-15 [ATMT]
2649
2557
-
Ser
GGA
[ENA]
¡û
>W141080317
ATMT01000024
Bacillota
Paenibacillus alvei TS-15 [ATMT]
32592
32500
-
Ser
GGA
[ENA]
¡û
>W141263388
CCDG010000006
Bacillota
Paenibacillus camerounensis G4 [CCDG]
213341
213250
-
Ser
GGA
[ENA]
¡û
>W141263439
CCDG010000101
Bacillota
Paenibacillus camerounensis G4 [CCDG]
20450
20359
-
Ser
GGA
[ENA]
¡û
>WENV183730213
PJTR01005409
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
774
682
-
Ser
GGA
[ENA]
¢þ
>W1910007069
BBYF01000010
Bacillota
Paenibacillus sp. NAIST15-1 [BBYF]
441
533
+
Ser
GGA
[ENA]
¡û
>W1910007083
BBYF01000012
Bacillota
Paenibacillus sp. NAIST15-1 [BBYF]
201711
201619
-
Ser
GGA
[ENA]
¡û
>W1911771071
QXJM01000039
Bacillota
Cohnella faecalis K2E09-144 [QXJM]
1229883
1229975
+
Ser
GGA
[ENA]
¡û
>W1810701682
QMFA01000007
Bacillota
Paenibacillus sp. YN15 [QMFA]
38629
38720
+
Ser
GGA
[ENA]
¡û
>W1810701705
QMFA01000027
Bacillota
Paenibacillus sp. YN15 [QMFA]
74
166
+
Ser
GGA
[ENA]
¡û
>C151046385
CP009241
Bacillota
Paenibacillus sp. FSL H7-0357 [CP009241]
921984
922076
+
Ser
GGA
[Ensembl]
¡û
>C151046426
CP009241
Bacillota
Paenibacillus sp. FSL H7-0357 [CP009241]
6596679
6596587
-
Ser
GGA
[Ensembl]
¡û
>C151047433
CP009279
Bacillota
Paenibacillus sp. FSL H7-0737 [CP009279]
948915
949007
+
Ser
GGA
[Ensembl]
¡û
>C151047479
CP009279
Bacillota
Paenibacillus sp. FSL H7-0737 [CP009279]
5828742
5828650
-
Ser
GGA
[Ensembl]
¡û
>C151047524
CP009280
Bacillota
Paenibacillus sp. FSL P4-0081 [CP009280]
1069326
1069417
+
Ser
GGA
[Ensembl]
¡û
>C151047565
CP009280
Bacillota
Paenibacillus sp. FSL P4-0081 [CP009280]
7401105
7401014
-
Ser
GGA
[Ensembl]
¡û
>C151047609
CP009281
Bacillota
Paenibacillus sp. FSL R5-0345 [CP009281]
874186
874278
+
Ser
GGA
[Ensembl]
¡û
>C151047652
CP009281
Bacillota
Paenibacillus sp. FSL R5-0345 [CP009281]
5841799
5841707
-
Ser
GGA
[Ensembl]
¡û
>C151047953
CP009285
Bacillota
Paenibacillus borealis DSM 13188 [CP009285]
1026230
1026321
+
Ser
GGA
[Ensembl]
¡û
>C151047994
CP009285
Bacillota
Paenibacillus borealis DSM 13188 [CP009285]
7155944
7155853
-
Ser
GGA
[Ensembl]
¡û
>C151104379
LN831776
Bacillota
Paenibacillus riograndensis SBR5 [LN831776]
1161543
1161634
+
Ser
GGA
[Ensembl]
¡û
>C151104421
LN831776
Bacillota
Paenibacillus riograndensis SBR5 [LN831776]
6864703
6864612
-
Ser
GGA
[Ensembl]
¡û
>W1511185314
JMDX01000283
Bacillota
Paenibacillus sp. E194 [JMDX]
6437
6345
-
Ser
GGA
[ENA]
¡û
>W1511185324
JMDX01000335
Bacillota
Paenibacillus sp. E194 [JMDX]
4899
4807
-
Ser
GGA
[ENA]
¡û
>W1511430215
JUEI01000281
Bacillota
Paenibacillus sp. IHB B 3415 [JUEI]
265
356
+
Ser
GGA
[ENA]
¡û
>W1511430221
JUEI01000281
Bacillota
Paenibacillus sp. IHB B 3415 [JUEI]
1517
1608
+
Ser
GGA
[ENA]
¡û
>C161034833
CP011388
Bacillota
Paenibacillus swuensis DY6 [CP011388]
134178
134087
-
Ser
GGA
[Ensembl]
¡û
>C161034851
CP011388
Bacillota
Paenibacillus swuensis DY6 [CP011388]
72878
72787
-
Ser
GGA
[Ensembl]
¡û
>W121122910
AMBZ01000004
Bacillota
Paenibacillus alvei DSM 29 [AMBZ]
147368
147460
+
Ser
GGA
[ENA]
¡û
>W121122930
AMBZ01000010
Bacillota
Paenibacillus alvei DSM 29 [AMBZ]
189666
189574
-
Ser
GGA
[ENA]
¡û
>W1610633994
LIRB01000143
Bacillota
Paenibacillus riograndensis [LIRB]
341
432
+
Ser
GGA
[ENA]
¡û
>W1710768426
LIRB01000143
Bacillota
Paenibacillus riograndensis [LIRB]
341
432
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK