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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95608 (18 seq.)
>W1711136331
LVAC01000002
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
300694
300610
-
Leu
CAA
[ENA]
¡û
>C171057216
CP017111
Campylobacterota
Sulfurospirillum halorespirans DSM 13726 DSM 13726; PCE-M2 [CP017111]
1554322
1554238
-
Leu
CAA
-
¡û
>C171118623
CP021416
Campylobacterota
Sulfurospirillum sp. SL2-1 [CP021416]
1568849
1568765
-
Leu
CAA
-
¡û
>WENV170640729
JFJP01024183
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1224
1308
+
Leu
CAA
[ENA]
¢þ
>WENV170657838
JTFP01025452
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
607
523
-
Leu
CAA
[ENA]
¢þ
>C181078348
CP023275
Campylobacterota
Sulfurospirillum diekertiae JPD-1 [CP023275]
1490880
1490796
-
Leu
CAA
-
¡û
>W09110107
ABUV01000008
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [ABUV]
60439
60523
+
Leu
CAA
[ENA]
¡û
>W141814430
JQGK01000001
Campylobacterota
Sulfurospirillum sp. SCADC [JQGK]
77290
77374
+
Leu
CAA
[ENA]
¡û
>C151018391
CP007201
Campylobacterota
Sulfurospirillum multivorans DSM 12446 [CP007201]
1542530
1542446
-
Leu
CAA
[Ensembl]
¡û
>W1510014710
BBQE01000001
Campylobacterota
Sulfurospirillum cavolei NBRC 109482 [BBQE]
104046
103962
-
Leu
CAA
[ENA]
¡û
>W1510014771
BBQF01000002
Campylobacterota
Sulfurospirillum arsenophilum NBRC 109478 [BBQF]
150151
150067
-
Leu
CAA
[ENA]
¡û
>C10111333
CP001816
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [CP001816]
969234
969150
-
Leu
CAA
[Ensembl]
¡û
>W1511327889
JQIR01000089
Campylobacterota
Sulfurovum sp. FS06-10 [JQIR]
3544
3628
+
Leu
CAA
[ENA]
¡û
>W1511365472
JSEC01000007
Campylobacterota
Sulfurospirillum sp. MES [JSEC]
63451
63535
+
Leu
CAA
[ENA]
¡û
>C121011180
CP003333
Campylobacterota
Sulfurospirillum barnesii SES-3 [CP003333]
1226803
1226719
-
Leu
CAA
[Ensembl]
¡û
>C161001379
AP014723
Campylobacterota
Sulfurospirillum sp. UCH001 [AP014723]
1346178
1346094
-
Leu
CAA
-
¡û
>C161001425
AP014724
Campylobacterota
Sulfurospirillum cavolei UCH003 [AP014724]
1199254
1199170
-
Leu
CAA
-
¡û
>W1610947451
LVAC01000002
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
300694
300610
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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