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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95608 (45 seq.)
>W1711979170
NDGJ01000035
Bacillota
Paenibacillus apiarius [NDGJ]
952
1037
+
Tyr
GTA
[ENA]
¡û
>W1711979209
NDGK01000004
Bacillota
Paenibacillus thiaminolyticus [NDGK]
84121
84036
-
Tyr
GTA
[ENA]
¡û
>W1711979219
NDGK01000010
Bacillota
Paenibacillus thiaminolyticus [NDGK]
207701
207616
-
Tyr
GTA
[ENA]
¡û
>WENV181801257
OGSB01000024
[OGSB] human gut metagenome; fecal sample 5 from infant 3
326
411
+
Tyr
GTA
[ENA]
¡û
>WENV181801445
OGSB01000321
[OGSB] human gut metagenome; fecal sample 5 from infant 3
207
292
+
Tyr
GTA
[ENA]
¡û
>WENV181822753
OGUH01000026
[OGUH] human gut metagenome; fecal sample 3 from infant 3
147
232
+
Tyr
GTA
[ENA]
¡û
>WENV181822919
OGUH01000217
[OGUH] human gut metagenome; fecal sample 3 from infant 3
22018
21933
-
Tyr
GTA
[ENA]
¡û
>WENV170708347
LNAP01071747
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
371
456
+
Tyr
GTA
[ENA]
¡û
>W1910155152
BIMI01000014
Bacillota
Paenibacillus thiaminolyticus NBRC 15656 [BIMI]
84051
83966
-
Tyr
GTA
[ENA]
¡û
>W1910155182
BIMI01000183
Bacillota
Paenibacillus thiaminolyticus NBRC 15656 [BIMI]
266
181
-
Tyr
GTA
[ENA]
¡û
>W1911771173
QXJP01000005
Bacillota
Paenibacillaceae bacterium SCSIO 06110 [QXJP]
442
527
+
Tyr
GTA
[ENA]
¡û
>W1911771211
QXJP01000019
Bacillota
Paenibacillaceae bacterium SCSIO 06110 [QXJP]
73472
73387
-
Tyr
GTA
[ENA]
¡û
>W1911809799
QYZD01000032
Bacillota
Paenibacillus thiaminolyticus BO5 [QYZD]
821
906
+
Tyr
GTA
[ENA]
¡û
>W1911809820
QYZD01000061
Bacillota
Paenibacillus thiaminolyticus BO5 [QYZD]
15560
15475
-
Tyr
GTA
[ENA]
¡û
>W1810683200
QKVW01000009
Bacillota
Paenibacillus dendritiformis PV3-16 [QKVW]
793
878
+
Tyr
GTA
[ENA]
¡û
>W1810683238
QKVW01000131
Bacillota
Paenibacillus dendritiformis PV3-16 [QKVW]
678
763
+
Tyr
GTA
[ENA]
¡û
>W2010088087
BIMI01000014
Bacillota
Paenibacillus thiaminolyticus NBRC 15656 [BIMI]
84051
83966
-
Tyr
GTA
[ENA]
¡û
>W2010088117
BIMI01000183
Bacillota
Paenibacillus thiaminolyticus NBRC 15656 [BIMI]
266
181
-
Tyr
GTA
[ENA]
¡û
>W2010288276
CABMNB010000004
Bacillota
Paenibacillus thiaminolyticus [CABMNB]
84121
84036
-
Tyr
GTA
[ENA]
¡û
>W2010288286
CABMNB010000010
Bacillota
Paenibacillus thiaminolyticus [CABMNB]
207701
207616
-
Tyr
GTA
[ENA]
¡û
>W2010499521
JAALJM010000006
Bacillota
Paenibacillus thiaminolyticus Mbale [JAALJM]
724002
724087
+
Tyr
GTA
[ENA]
¡û
>W2010499532
JAALJM010000006
Bacillota
Paenibacillus thiaminolyticus Mbale [JAALJM]
1935896
1935981
+
Tyr
GTA
[ENA]
¡û
>W2010578077
JAAWWZ010000117
Bacillota
Paenibacillus dendritiformis CRN 18 [JAAWWZ]
679
764
+
Tyr
GTA
[ENA]
¡û
>W2010578087
JAAWWZ010000126
Bacillota
Paenibacillus dendritiformis CRN 18 [JAAWWZ]
779
864
+
Tyr
GTA
[ENA]
¡û
>W2011328420
QXJP01000005
Bacillota
Paenibacillaceae bacterium SCSIO 06110 [QXJP]
442
527
+
Tyr
GTA
[ENA]
¡û
>W2011328458
QXJP01000019
Bacillota
Paenibacillaceae bacterium SCSIO 06110 [QXJP]
73472
73387
-
Tyr
GTA
[ENA]
¡û
>W2011345243
QYZD01000032
Bacillota
Paenibacillus thiaminolyticus BO5 [QYZD]
821
906
+
Tyr
GTA
[ENA]
¡û
>W2011345264
QYZD01000061
Bacillota
Paenibacillus thiaminolyticus BO5 [QYZD]
15560
15475
-
Tyr
GTA
[ENA]
¡û
>W2011642809
SMZW01000004
Bacillota
Paenibacillus dendritiformis F-A1 [SMZW]
836
921
+
Tyr
GTA
[ENA]
¡û
>W2011642822
SMZW01000006
Bacillota
Paenibacillus dendritiformis F-A1 [SMZW]
396950
396865
-
Tyr
GTA
[ENA]
¡û
>W2011833744
UGRZ01000002
Bacillota
Paenibacillus thiaminolyticus NCTC11027 [UGRZ]
1731307
1731222
-
Tyr
GTA
[ENA]
¡û
>W2011833755
UGRZ01000002
Bacillota
Paenibacillus thiaminolyticus NCTC11027 [UGRZ]
562123
562038
-
Tyr
GTA
[ENA]
¡û
>W2110067018
BORX01000002
Bacillota
Paenibacillus dendritiformis J27TS7 [BORX]
835
920
+
Tyr
GTA
[ENA]
¡û
>W2110067031
BORX01000003
Bacillota
Paenibacillus dendritiformis J27TS7 [BORX]
933
1018
+
Tyr
GTA
[ENA]
¡û
>W2110067106
BORY01000008
Bacillota
Paenibacillus dendritiformis J6TS7 [BORY]
80770
80685
-
Tyr
GTA
[ENA]
¡û
>W2110067161
BORY01000158
Bacillota
Paenibacillus dendritiformis J6TS7 [BORY]
941
1026
+
Tyr
GTA
[ENA]
¡û
>W2110430890
JAEMXM010000018
Bacillota
Paenibacillus sp. YIM B00362 YIM B00362 [JAEMXM]
103509
103424
-
Tyr
GTA
[ENA]
¡û
>C231012162
AP025344
Bacillota
Paenibacillus dendritiformis J27TS7 [AP025344]
1194927
1195012
+
Tyr
GTA
-
¡û
>C231012195
AP025344
Bacillota
Paenibacillus dendritiformis J27TS7 [AP025344]
6485866
6485951
+
Tyr
GTA
-
¡û
>W2110745236
LDIG01000158
Bacillota
Paenibacillus dendritiformis G25-126 [LDIG]
7551
7466
-
Tyr
GTA
[ENA]
¡û
>W2110745270
LDIG01000274
Bacillota
Paenibacillus dendritiformis G25-126 [LDIG]
2604
2689
+
Tyr
GTA
[ENA]
¡û
>C231344108
CP094446
Bacillota
Paenibacillus thiaminolyticus Mbale2 [CP094446]
4516539
4516454
-
Tyr
GTA
-
¡û
>C231344118
CP094446
Bacillota
Paenibacillus thiaminolyticus Mbale2 [CP094446]
3367525
3367440
-
Tyr
GTA
-
¡û
>C231507157
CP106992
Bacillota
Paenibacillus thiaminolyticus SY20 [CP106992]
173515
173600
+
Tyr
GTA
-
¡û
>C231507168
CP106992
Bacillota
Paenibacillus thiaminolyticus SY20 [CP106992]
1353433
1353518
+
Tyr
GTA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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