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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95620 (51 seq.)
>W1710893304
LNEP01000006
Betaproteobacteria
Betaproteobacteria bacterium Ga0077540 [LNEP]
602
518
-
Tyr
GTA
[ENA]
¡û
>W1711224666
LXUF01000011
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
394547
394463
-
Tyr
GTA
[ENA]
¡û
>W1711339984
MCAW01000002
Betaproteobacteria
Methylophilales bacterium LSUCC0135 [MCAW]
734
650
-
Tyr
GTA
[ENA]
¡û
>W131164752
ARBA01000003
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
539670
539586
-
Tyr
GTA
[ENA]
¡û
>W131186398
ARWC01000001
Betaproteobacteria
Methylotenera sp. 1P/1 [ARWC]
2269093
2269177
+
Tyr
GTA
[ENA]
¡û
>C013375
CP000284
Betaproteobacteria
Methylobacillus flagellatus KT [CP000284]
269738
269822
+
Tyr
GTA
[Ensembl]
¡û
>WENV180038579
FZPZ01000204
[FZPZ] metagenome; underground water
889
805
-
Tyr
GTA
[ENA]
¢þ
>WENV180039327
LLBY010052075
[LLBY] soil metagenome; soil from tomato rhizosphere
367
283
-
Tyr
GTA
[ENA]
¢þ
>WENV180311709
OBJT01491638
[OBJT] soil metagenome; soil
94
10
-
Tyr
GTA
[ENA]
¢þ
>WENV180391257
OBPM01063292
[OBPM] marine metagenome; ENVO:00002010
60
144
+
Tyr
GTA
[ENA]
¢þ
>WENV181222623
OFDC01000032
[OFDC] hot springs metagenome; Water
558
474
-
Tyr
GTA
[ENA]
¢þ
>WENV181226732
OFDN01000027
[OFDN] hot springs metagenome; Water
539
455
-
Tyr
GTA
[ENA]
¢þ
>WENV181379604
OFRD01003940
[OFRD] wastewater metagenome; Exp Tend CN 100WW
946
1030
+
Tyr
GTA
[ENA]
¢þ
>WENV181835558
OGVI01003352
[OGVI] freshwater metagenome; freshwater
131
47
-
Tyr
GTA
[ENA]
¢þ
>W141229545
BAMT01000006
Betaproteobacteria
Methylobacillus glycogenes JCM 2850 [BAMT]
189744
189828
+
Tyr
GTA
[ENA]
¡û
>W141350139
JCKJ01000001
Betaproteobacteria
Methylophilaceae bacterium 11 [JCKJ]
349355
349439
+
Tyr
GTA
[ENA]
¡û
>WENV183726676
PJTO01000064
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
163957
164041
+
Tyr
GTA
[ENA]
¢þ
>WENV183736829
PJUD01000046
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
481
397
-
Tyr
GTA
[ENA]
¢þ
>WENV183740615
PJUF01004516
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1350
1434
+
Tyr
GTA
[ENA]
¢þ
>WENV170000149
AERA01017287
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
153
237
+
Tyr
GTA
[ENA]
¢þ
>WENV170559045
CXWL01107736
[CXWL] groundwater metagenome; biofilm material
11224
11308
+
Tyr
GTA
[ENA]
¢þ
>WENV170654802
JRYL01023830
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
2647
2731
+
Tyr
GTA
[ENA]
¢þ
>WENV170670798
LAHU01001509
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
588
504
-
Tyr
GTA
[ENA]
¢þ
>WENV170708462
LNAP01084187
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
634
550
-
Tyr
GTA
[ENA]
¢þ
>WENV170709205
LNFM01000180
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
597
513
-
Tyr
GTA
[ENA]
¢þ
>WENV170823961
MDSY01067486
[MDSY] marine metagenome; seawater
92
8
-
Tyr
GTA
[ENA]
¢þ
>WENV170961457
MLJW01000054
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
41986
41902
-
Tyr
GTA
[ENA]
¢þ
>WENV170961893
MLJW01005253
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
1407
1491
+
Tyr
GTA
[ENA]
¢þ
>W09101037
AADX02000024
Betaproteobacteria
Methylobacillus flagellatus KT [AADX]
13367
13283
-
Tyr
GTA
[ENA]
¡û
>W141819355
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
1225087
1225171
+
Tyr
GTA
[ENA]
¡û
>W1910730029
MHBU01000022
Betaproteobacteria
Methylotenera sp. RIFCSPLOWO2_02_FULL_45_14 [MHBU]
120055
120139
+
Tyr
GTA
[ENA]
¡û
>C09107556
CP001674
Betaproteobacteria
Methylovorus glucosotrophus SIP3-4 [CP001674]
303326
303410
+
Tyr
GTA
[Ensembl]
¡û
>C09107783
CP001672
Betaproteobacteria
Methylotenera mobilis JLW8 [CP001672]
356762
356846
+
Tyr
GTA
[Ensembl]
¡û
>W1911624000
PQVH01000010
Betaproteobacteria
Methylotenera oryzisoli La3113 [PQVH]
513
429
-
Tyr
GTA
[ENA]
¡û
>C151104063
LN794158
Betaproteobacteria
Candidatus Methylopumilus turicensis MMS-10A-171 [LN794158]
200122
200206
+
Tyr
GTA
[Ensembl]
¡û
>ENV09000087
ABSN01006905
Freshwater sediment metagenome lwFormaldehyde_C1
204
120
-
Tyr
GTA
[ENA]
¡û
>ENV09000120
ABSN01014228
Freshwater sediment metagenome lwFormaldehyde_C1
222
138
-
Tyr
GTA
[ENA]
¡û
>ENV09001043
ABSQ01021434
Freshwater sediment metagenome lwMethenol_C1
449
365
-
Tyr
GTA
[ENA]
¡û
>ENV09001301
ABSR01000793
Freshwater sediment metagenome lwMethylamine_C1
3086
3002
-
Tyr
GTA
[ENA]
¡û
>ENV09001318
ABSR01001339
Freshwater sediment metagenome lwMethylamine_C1
2721
2805
+
Tyr
GTA
[ENA]
¡û
>ENV09001398
ABSR01004748
Freshwater sediment metagenome lwMethylamine_C1
192
108
-
Tyr
GTA
[ENA]
¡û
>C10109340
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
357375
357459
+
Tyr
GTA
[Ensembl]
¡û
>WENV11100507
AERA01017287
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
153
237
+
Tyr
GTA
[ENA]
¡û
>C11114191
CP002252
Betaproteobacteria
Methylovorus sp. MP688 [CP002252]
302798
302882
+
Tyr
GTA
[Ensembl]
¡û
>W1511431964
JUGE01000001
Betaproteobacteria
Methylotenera sp. N17 [JUGE]
49077
49161
+
Tyr
GTA
[ENA]
¡û
>W1511433537
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
2157854
2157938
+
Tyr
GTA
[ENA]
¡û
>WENV058926
AACY023347323
Marine microbial communities from Global Ocean Sampling (GOS)
725
811
+
Tyr
GTA
[ENA]
>W1610627195
LIDI01000086
Betaproteobacteria
Methylophilales bacterium BACL14 MAG-120920-bin58 [LIDI]
130
46
-
Tyr
GTA
[ENA]
¡û
>W1610753570
LNEP01000006
Betaproteobacteria
Betaproteobacteria bacterium Ga0077540 [LNEP]
602
518
-
Tyr
GTA
[ENA]
¡û
>W1611008630
LXUF01000011
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
394547
394463
-
Tyr
GTA
[ENA]
¡û
>W1710758322
LIDI01000086
Betaproteobacteria
Methylophilales bacterium BACL14 MAG-120920-bin58 [LIDI]
130
46
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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