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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95635 (6 seq.)
>W1710893268
LNEO01000171
Unclassified
Deltaproteobacteria bacterium Ga0077539 [LNEO]
2339
2254
-
Tyr
GTA
[ENA]
¡û
>WENV180035408
FTKV01000035
[FTKV] metagenome; soil
408
324
-
Tyr
GTA
[ENA]
¡û
>WENV170712390
LNFM01012792
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2339
2254
-
Tyr
GTA
[ENA]
¡û
>W2011690851
SSMR01000003
Myxococcota
Polyangium sp. SDU3-1 [SSMR]
561
476
-
Tyr
GTA
[ENA]
¡û
>C231161595
CP079217
Myxococcota
Polyangium aurulentum SDU3-1 [CP079217]
4827886
4827971
+
Tyr
GTA
-
¡û
>W1610753534
LNEO01000171
Unclassified
Deltaproteobacteria bacterium Ga0077539 [LNEO]
2339
2254
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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