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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95653 (68 seq.)
>W1710920293
LNYK01000033
Gammaproteobacteria
Legionella londiniensis [LNYK]
81185
81101
-
Leu
GAG
[ENA]
¡û
>W131249959
CAUE01000104
Gammaproteobacteria
Coxiella burnetii Z3055 [CAUE]
21371
21290
-
Leu
GAG
[ENA]
¡û
>W131251129
CAVF010000020
Gammaproteobacteria
Coxiella burnetii Cb175_Guyana [CAVF]
180875
180794
-
Leu
GAG
[ENA]
¡û
>W1711628077
MPNY01000015
Gammaproteobacteria
Solemya velum gill symbiont [MPNY]
8786
8870
+
Leu
GAG
[ENA]
¡û
>W1711630133
MPPZ01000005
Gammaproteobacteria
Solemya velum gill symbiont [MPPZ]
8791
8875
+
Leu
GAG
[ENA]
¡û
>W1711631174
MPRA01000006
Gammaproteobacteria
Solemya velum gill symbiont [MPRA]
2396
2480
+
Leu
GAG
[ENA]
¡û
>W1711631498
MPRI01000013
Gammaproteobacteria
Solemya velum gill symbiont [MPRI]
2396
2480
+
Leu
GAG
[ENA]
¡û
>W1711631739
MPRO01000016
Gammaproteobacteria
Solemya velum gill symbiont [MPRO]
11818
11902
+
Leu
GAG
[ENA]
¡û
>W1711631815
MPRQ01000008
Gammaproteobacteria
Solemya velum gill symbiont [MPRQ]
4414
4498
+
Leu
GAG
[ENA]
¡û
>W1711631897
MPRS01000013
Gammaproteobacteria
Solemya velum gill symbiont [MPRS]
104606
104522
-
Leu
GAG
[ENA]
¡û
>W1711631999
MPRV01000006
Gammaproteobacteria
Solemya velum gill symbiont [MPRV]
104825
104741
-
Leu
GAG
[ENA]
¡û
>W1711632092
MPRX01000039
Gammaproteobacteria
Solemya velum gill symbiont [MPRX]
4695
4779
+
Leu
GAG
[ENA]
¡û
>C171052466
CP016868
Gammaproteobacteria
Legionella pneumophila subsp. pneumophila FFI102 [CP016868]
3129233
3129317
+
Leu
GAG
-
¡û
>C171052503
CP016870
Gammaproteobacteria
Legionella pneumophila subsp. pneumophila FFI103 [CP016870]
2213275
2213191
-
Leu
GAG
-
¡û
>C171052624
CP016874
Gammaproteobacteria
Legionella pneumophila subsp. pneumophila FFI329 [CP016874]
2099037
2099121
+
Leu
GAG
-
¡û
>C171071283
CP018005
Gammaproteobacteria
Coxiella burnetii RSA439 [CP018005]
1375756
1375675
-
Leu
GAG
-
¡û
>C171110913
CP020616
Gammaproteobacteria
Coxiella burnetii RSA 439 [CP020616]
1375743
1375662
-
Leu
GAG
-
¡û
>C005231
AE016828
Gammaproteobacteria
Coxiella burnetii RSA 493 [AE016828]
1401806
1401725
-
Leu
GAG
[Ensembl]
¡û
>w020068
AAUP01000006
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [AAUP]
46279
46363
+
Leu
GAG
[ENA]
¡û
>w016771
AAQO01000025
Gammaproteobacteria
Coxiella burnetii RSA 331 [AAQO]
29124
29040
-
Leu
GAG
[ENA]
¡û
>w016647
AAQI01000017
Gammaproteobacteria
Coxiella burnetii Dugway 7E9-12 [AAQI] Dugway 7E9-12 [AAQI]
10179
10263
+
Leu
GAG
[ENA]
¡û
>W141027236
AKYP01000102
Gammaproteobacteria
Coxiella burnetii cb109 [AKYP]
319
400
+
Leu
GAG
[ENA]
¡û
>C08003057
CP000890
Gammaproteobacteria
Coxiella burnetii RSA 331 [CP000890]
1482387
1482306
-
Leu
GAG
[Ensembl]
¡û
>W141260718
CCAI010000021
Gammaproteobacteria
Coxiella burnetii [CCAI]
179793
179712
-
Leu
GAG
[ENA]
¡û
>W141260759
CCAJ010000042
Gammaproteobacteria
Coxiella burnetii [CCAJ]
22293
22212
-
Leu
GAG
[ENA]
¡û
>W141260804
CCAK010000136
Gammaproteobacteria
Coxiella burnetii [CCAK]
14647
14566
-
Leu
GAG
[ENA]
¡û
>W141260853
CCAL010000019
Gammaproteobacteria
Coxiella burnetii [CCAL]
179651
179570
-
Leu
GAG
[ENA]
¡û
>W141260894
CCAM010000064
Gammaproteobacteria
Coxiella burnetii [CCAM]
21616
21535
-
Leu
GAG
[ENA]
¡û
>WENV170332418
CESW01149649
[CESW] marine metagenome genome assembly TARA_096_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6473
6557
+
Leu
GAG
[ENA]
¢þ
>WENV170428111
CEUQ01338073
[CEUQ] marine metagenome genome assembly TARA_124_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
312
228
-
Leu
GAG
[ENA]
¢þ
>WENV170808239
MDSW01111555
[MDSW] marine metagenome; seawater
4770
4854
+
Leu
GAG
[ENA]
¢þ
>WENV170939803
MDTG01332357
[MDTG] marine metagenome; seawater
88440
88356
-
Leu
GAG
[ENA]
¢þ
>C191091532
CP032542
Gammaproteobacteria
Coxiella burnetii 2014-PE-15890 [CP032542]
898762
898843
+
Leu
GAG
-
¡û
>C191134932
CP035112
Gammaproteobacteria
Coxiella burnetii nine mile phase II [CP035112]
1660421
1660340
-
Leu
GAG
-
¡û
>C191174670
CP040059
Gammaproteobacteria
Coxiella burnetii RSA439 [CP040059]
1375614
1375533
-
Leu
GAG
-
¡û
>C09102972
CP001019
Gammaproteobacteria
Coxiella burnetii CbuG_Q212 [CP001019]
525478
525559
+
Leu
GAG
[Ensembl]
¡û
>C09103018
CP001020
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 [CP001020]
532094
532175
+
Leu
GAG
[Ensembl]
¡û
>W1910725954
MGOZ01000008
Gammaproteobacteria
Coxiella sp. RIFCSPHIGHO2_12_FULL_42_15 [MGOZ]
15050
14966
-
Leu
GAG
[ENA]
¡û
>W1911118945
NOLM01000009
Gammaproteobacteria
Coxiella burnetii Dugway 7E65-68 [NOLM]
8372
8453
+
Leu
GAG
[ENA]
¡û
>W1911119060
NOLO01000015
Gammaproteobacteria
Coxiella burnetii Turkey RSA315 [NOLO]
180736
180655
-
Leu
GAG
[ENA]
¡û
>W1911119071
NOLP01000018
Gammaproteobacteria
Coxiella burnetii Ko Q229 [NOLP]
31400
31481
+
Leu
GAG
[ENA]
¡û
>W1911119186
NOLR01000018
Gammaproteobacteria
Coxiella burnetii Idaho Goat Q195 [NOLR]
179704
179623
-
Leu
GAG
[ENA]
¡û
>W1911119228
NOLS01000015
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA338 [NOLS]
180736
180655
-
Leu
GAG
[ENA]
¡û
>W1911119270
NOLT01000015
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA270 [NOLT]
180736
180655
-
Leu
GAG
[ENA]
¡û
>W1911119312
NOLU01000016
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 [NOLU]
180736
180655
-
Leu
GAG
[ENA]
¡û
>W1911119354
NOLV01000015
Gammaproteobacteria
Coxiella burnetii California 33 RSA329 [NOLV]
180736
180655
-
Leu
GAG
[ENA]
¡û
>W1911136653
NOVF01000015
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 clone 2 [NOVF]
180736
180655
-
Leu
GAG
[ENA]
¡û
>W1911136695
NOVG01000016
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA514 [NOVG]
180664
180583
-
Leu
GAG
[ENA]
¡û
>W1911136737
NOVH01000016
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA363 [NOVH]
180736
180655
-
Leu
GAG
[ENA]
¡û
>W1911136821
NOVJ01000015
Gammaproteobacteria
Coxiella burnetii Australia RSA425 [NOVJ]
180736
180655
-
Leu
GAG
[ENA]
¡û
>W1911136863
NOVK01000015
Gammaproteobacteria
Coxiella burnetii Australia RSA297 [NOVK]
180736
180655
-
Leu
GAG
[ENA]
¡û
>W1810235672
PPFM01000002
Gammaproteobacteria
Coxiella burnetii Q559 [PPFM]
37639
37720
+
Leu
GAG
[ENA]
¡û
>W1810235713
PPFN01000002
Gammaproteobacteria
Coxiella burnetii Q556 [PPFN]
37639
37720
+
Leu
GAG
[ENA]
¡û
>W1810235799
PPFP01000012
Gammaproteobacteria
Coxiella burnetii Q540 [PPFP]
16272
16353
+
Leu
GAG
[ENA]
¡û
>W1810235840
PPFQ01000002
Gammaproteobacteria
Coxiella burnetii Q532 [PPFQ]
179698
179617
-
Leu
GAG
[ENA]
¡û
>W1810235898
PPFR01000010
Gammaproteobacteria
Coxiella burnetii Cb3506 [PPFR]
21468
21387
-
Leu
GAG
[ENA]
¡û
>C151091910
CP012154
Gammaproteobacteria
Wenzhouxiangella marina KCTC 42284 [CP012154]
696623
696707
+
Leu
GAG
-
¡û
>C151102385
LK937696
Gammaproteobacteria
Coxiella burnetii Z3055 [LK937696]
1402002
1401921
-
Leu
GAG
-
¡û
>W1510060739
CCXO01000002
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 Cb196_Saudi_Arabia [CCXO]
1543
1624
+
Leu
GAG
[ENA]
¡û
>W1510061116
CCYB01000025
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCYB]
31277
31358
+
Leu
GAG
[ENA]
¡û
>W1511336219
JRAA01000001
Gammaproteobacteria
Solemya velum gill symbiont gill symbiont WH [JRAA]
435560
435644
+
Leu
GAG
[ENA]
¡û
>W1511555136
JZWL01000002
Gammaproteobacteria
Coxiella burnetii NL-Limburg [JZWL]
121110
121029
-
Leu
GAG
[ENA]
¡û
>C161017338
CP007555
Gammaproteobacteria
Coxiella burnetii str. Namibia [CP007555]
531066
531147
+
Leu
GAG
[Ensembl]
¡û
>C161059038
CP013667
Gammaproteobacteria
Coxiella burnetii 3262 [CP013667]
898842
898923
+
Leu
GAG
-
¡û
>C161071904
CP014354
Gammaproteobacteria
Coxiella burnetii 3345937 [CP014354]
843002
843083
+
Leu
GAG
-
¡û
>W1610585105
LCUP01000050
Gammaproteobacteria
Legionella pneumophila [LCUP]
175463
175547
+
Leu
GAG
[ENA]
¡û
>W1610585118
LCUQ01000012
Gammaproteobacteria
Legionella pneumophila [LCUQ]
68373
68457
+
Leu
GAG
[ENA]
¡û
>W1610778191
LNYK01000033
Gammaproteobacteria
Legionella londiniensis [LNYK]
81185
81101
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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