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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95664 (58 seq.)
>W1711128083
LURJ01000002
Cyanobacteriota
Synechococcus sp. REDSEA-S01_B1 [LURJ]
22797
22878
+
Leu
GAG
[ENA]
¡û
>W1711377902
MDZH01000173
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
128426
128507
+
Leu
GAG
[ENA]
¡û
>W131063364
ANKQ01000001
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
1163819
1163738
-
Leu
GAG
[ENA]
¡û
>W131087164
AOCI01000052
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
62179
62260
+
Leu
GAG
[ENA]
¡û
>W131203760
ASZQ01000161
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
1978
2059
+
Leu
GAG
[ENA]
¡û
>W1711603043
MOLN01000186
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
3473
3554
+
Leu
GAG
[ENA]
¡û
>W1711666577
MRCC01000005
Cyanobacteriota
Chroogloeocystis siderophila 5.2 s.c.1 [MRCC]
39218
39302
+
Leu
GAG
[ENA]
¡û
>W1711772039
MVGR01000005
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
483279
483360
+
Leu
GAG
[ENA]
¡û
>C171016659
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
868937
868856
-
Leu
GAG
-
¡û
>C171112050
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
102063
102144
+
Leu
GAG
-
¡û
>W141065574
AQPY01000750
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
2304
2223
-
Leu
GAG
[ENA]
¡û
>W141073721
ASSJ01000049
Cyanobacteriota
Rubidibacter lacunae KORDI 51-2 [ASSJ]
122198
122279
+
Leu
GAG
[ENA]
¡û
>WENV181411252
OGCI01017897
[OGCI] hot springs metagenome; Hot spring water
522
441
-
Leu
GAG
[ENA]
¢þ
>W141242382
CAIH01000275
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
3261
3342
+
Leu
GAG
[ENA]
¡û
>W141242420
CAII01000567
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
2081
2162
+
Leu
GAG
[ENA]
¡û
>W141242466
CAIJ01000592
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
1977
2058
+
Leu
GAG
[ENA]
¡û
>W141242484
CAIK01000107
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
7956
7875
-
Leu
GAG
[ENA]
¡û
>W141242515
CAIL01000040
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
3470
3551
+
Leu
GAG
[ENA]
¡û
>W141242554
CAIM01000172
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
3481
3562
+
Leu
GAG
[ENA]
¡û
>W141242624
CAIN01000457
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
3312
3393
+
Leu
GAG
[ENA]
¡û
>W141242637
CAIO01000157
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
3609
3690
+
Leu
GAG
[ENA]
¡û
>W141242689
CAIP01000211
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
219
138
-
Leu
GAG
[ENA]
¡û
>W141242724
CAIQ01000237
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
6948
7029
+
Leu
GAG
[ENA]
¡û
>C08006381
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
1100027
1099946
-
Leu
GAG
[Ensembl]
¡û
>WENV170680967
LFEF01039373
[LFEF] freshwater metagenome; waterbloom
36997
36916
-
Leu
GAG
[ENA]
¢þ
>WENV170756196
LUMO01010659
[LUMO] marine metagenome; Red Sea water column Station 22 - depth 10m
437
518
+
Leu
GAG
[ENA]
¢þ
>WENV170822768
MDSY01046173
[MDSY] marine metagenome; seawater
4731
4650
-
Leu
GAG
[ENA]
¢þ
>WENV170998946
MWWJ01172356
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
252
335
+
Leu
GAG
[ENA]
¢þ
>C181046164
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
1826815
1826896
+
Leu
GAG
-
¡û
>C191007268
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
4909833
4909752
-
Leu
GAG
-
¡û
>W1910020339
BDSG01000005
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
354
273
-
Leu
GAG
[ENA]
¡û
>W1910020413
BDSM01000055
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
72607
72526
-
Leu
GAG
[ENA]
¡û
>W1910038654
BEIU01000005
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
192343
192262
-
Leu
GAG
[ENA]
¡û
>W1910038702
BEIV01000032
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
22514
22595
+
Leu
GAG
[ENA]
¡û
>W1910067353
BEYQ01000004
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
290822
290903
+
Leu
GAG
[ENA]
¡û
>W1910067393
BFAC01000004
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
2356
2437
+
Leu
GAG
[ENA]
¡û
>W1910142341
BIFY01000077
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
16906
16825
-
Leu
GAG
[ENA]
¡û
>W1910665591
MCIH01000225
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
3292
3373
+
Leu
GAG
[ENA]
¡û
>W1910768696
MOLZ01000254
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
3400
3481
+
Leu
GAG
[ENA]
¡û
>W1910812540
MVDI01000001
Cyanobacteriota
Chroococcidiopsis sp. TS-821 [MVDI]
278646
278565
-
Leu
GAG
[ENA]
¡û
>W1810076208
PEIG01000006
Cyanobacteriota
Gloeocapsopsis sp. IPPAS B-1203 IPPAS B-1203 [PEIG]
95252
95171
-
Leu
GAG
[ENA]
¡û
>W1810296705
PTJN01000042
Cyanobacteriota
Gloeocapsopsis dulcis AAB1 [PTJN]
52269
52188
-
Leu
GAG
[ENA]
¡û
>C151079390
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
873555
873474
-
Leu
GAG
[Ensembl]
¡û
>C151080688
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
1660223
1660304
+
Leu
GAG
-
¡û
>SRA1025452
SRR035085.9452
454 Sequencing (SRP001806)
276
195
-
Leu
GAG
[SRA]
>SRA1025613
SRR035085.49731
454 Sequencing (SRP001806)
281
200
-
Leu
GAG
[SRA]
>SRA1025774
SRR035085.80703
454 Sequencing (SRP001806)
279
198
-
Leu
GAG
[SRA]
>SRA1035066
SRR035089.230205
454 Sequencing (SRP001810)
203
122
-
Leu
GAG
[SRA]
>W1510013640
BBPA01000068
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
59791
59710
-
Leu
GAG
[ENA]
¡û
>W1511324001
JQFA01000002
Cyanobacteriota
Leptolyngbya sp. KIOST-1 [JQFA]
1741597
1741678
+
Leu
GAG
[ENA]
¡û
>C131004994
CP003646
Cyanobacteriota
Gloeocapsa sp. PCC 7428 [CP003646]
2099598
2099517
-
Leu
GAG
[Ensembl]
¡û
>W1610550839
JXYX01000017
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
81027
81108
+
Leu
GAG
[ENA]
¡û
>W1610939197
LURJ01000002
Cyanobacteriota
Synechococcus sp. REDSEA-S01_B1 [LURJ]
22797
22878
+
Leu
GAG
[ENA]
¡û
>W1710004725
AJHB01000346
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
124
43
-
Leu
GAG
[ENA]
¡û
>W1710005073
AJUS01000380
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
124
43
-
Leu
GAG
[ENA]
¡û
>W1710005109
AJUT01000351
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
160
79
-
Leu
GAG
[ENA]
¡û
>W1710005146
AJUU01000351
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
125
44
-
Leu
GAG
[ENA]
¡û
>W1710660716
JXYX01000017
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
81027
81108
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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