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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95717 (99 seq.)
>W1710777858
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
1006021
1005937
-
Leu
TAG
[ENA]
¡û
>W1710777906
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
1022237
1022153
-
Leu
TAG
[ENA]
¡û
>W1710892048
LNDJ01000013
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
25372
25456
+
Leu
TAG
[ENA]
¡û
>W1710915854
LNUO01000125
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
18838
18922
+
Leu
TAG
[ENA]
¡û
>W1711227871
LXWA01000031
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
161433
161517
+
Leu
TAG
[ENA]
¡û
>W1711303108
MAJM01000003
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
863960
863876
-
Leu
TAG
[ENA]
¡û
>W1711682895
MRYA01000001
Gammaproteobacteria
Psychrobacter sp. Cmf 22.2 [MRYA]
736555
736471
-
Leu
TAG
[ENA]
¡û
>W1711682949
MRYB01000005
Gammaproteobacteria
Psychrobacter sp. Rd 27.2 [MRYB]
151394
151310
-
Leu
TAG
[ENA]
¡û
>W1711682988
MRYC01000004
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
30009
30093
+
Leu
TAG
[ENA]
¡û
>W1711766703
MUYT01000007
Gammaproteobacteria
Moraxella lincolnii [MUYT]
255920
256004
+
Leu
TAG
[ENA]
¡û
>C171019128
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
2963527
2963443
-
Leu
TAG
-
¡û
>C171131070
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
2339698
2339782
+
Leu
TAG
-
¡û
>W131180581
ARNF01000070
Gammaproteobacteria
Psychrobacter lutiphocae DSM 21542 [ARNF]
49908
49824
-
Leu
TAG
[ENA]
¡û
>W131180582
ARNF01000070
Gammaproteobacteria
Psychrobacter lutiphocae DSM 21542 [ARNF]
49398
49314
-
Leu
TAG
[ENA]
¡û
>C015812
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1883491
1883575
+
Leu
TAG
[Ensembl]
¡û
>C015974
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
2127379
2127463
+
Leu
TAG
[Ensembl]
¡û
>C017901
CP000713
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [CP000713]
2241199
2241283
+
Leu
TAG
[Ensembl]
¡û
>C017902
CP000713
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [CP000713]
2241558
2241642
+
Leu
TAG
[Ensembl]
¡û
>WENV180101019
OAOU01000001
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
424235
424319
+
Leu
TAG
[ENA]
¢þ
>WENV180101054
OAOU01000078
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
19265
19349
+
Leu
TAG
[ENA]
¢þ
>WENV180101080
OAOU01000263
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
4675
4591
-
Leu
TAG
[ENA]
¢þ
>w003212
AADI01000002
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
676321
676407
+
Leu
TAG
[ENA]
¡û
>W141086192
AUSW01000034
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
484507
484591
+
Leu
TAG
[ENA]
¡û
>WENV181414411
OGCL01000352
[OGCL] hot springs metagenome; Hot spring water
43146
43230
+
Leu
TAG
[ENA]
¢þ
>W141195674
AYUI01000044
Gammaproteobacteria
Psychrobacter sp. TB2 [AYUI]
189832
189748
-
Leu
TAG
[ENA]
¡û
>W141199968
AYXM01000081
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
79387
79471
+
Leu
TAG
[ENA]
¡û
>W141200015
AYXN01000042
Gammaproteobacteria
Psychrobacter sp. TB15 [AYXN]
122502
122586
+
Leu
TAG
[ENA]
¡û
>W141200500
AYXZ01000027
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
24913
24829
-
Leu
TAG
[ENA]
¡û
>W141200548
AYYA01000004
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
64651
64735
+
Leu
TAG
[ENA]
¡û
>C08007209
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1883491
1883575
+
Leu
TAG
[Ensembl]
¡û
>W141233976
BAWG01000004
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
26459
26375
-
Leu
TAG
[ENA]
¡û
>W141233996
BAWH01000001
Gammaproteobacteria
Psychrobacter sp. JCM 18901 [BAWH]
63123
63039
-
Leu
TAG
[ENA]
¡û
>W141234048
BAWI01000003
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
186474
186390
-
Leu
TAG
[ENA]
¡û
>W141234076
BAWJ01000002
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
156015
155931
-
Leu
TAG
[ENA]
¡û
>WENV182549367
OJBY01000450
[OJBY] seawater metagenome; Sea water
4482
4398
-
Leu
TAG
[ENA]
¢þ
>WENV182549777
OJBZ01000009
[OJBZ] seawater metagenome; Sea water
156362
156446
+
Leu
TAG
[ENA]
¢þ
>WENV182562307
OJDZ01000636
[OJDZ] seawater metagenome; Sea water
14991
14907
-
Leu
TAG
[ENA]
¢þ
>WENV182562384
OJDZ01001854
[OJDZ] seawater metagenome; Sea water
4521
4437
-
Leu
TAG
[ENA]
¢þ
>WENV170291801
CESA01213340
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
115
31
-
Leu
TAG
[ENA]
¢þ
>WENV170486866
CEVO01004342
[CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
502
586
+
Leu
TAG
[ENA]
¢þ
>WENV170563731
CZCB01027123
[CZCB] anaerobic digester metagenome; anaerobic digester
1097
1181
+
Leu
TAG
[ENA]
¢þ
>WENV170579218
FUFK010038315
[FUFK] metagenome; unknown
146000
145916
-
Leu
TAG
[ENA]
¢þ
>WENV170579583
FUFK010039859
[FUFK] metagenome; unknown
38121
38037
-
Leu
TAG
[ENA]
¢þ
>WENV170580448
FUFK010046512
[FUFK] metagenome; unknown
62959
63043
+
Leu
TAG
[ENA]
¢þ
>WENV170595563
FUFK011851074
[FUFK] metagenome; unknown
308
224
-
Leu
TAG
[ENA]
¢þ
>WENV170595831
FUFK011989535
[FUFK] metagenome; unknown
272
188
-
Leu
TAG
[ENA]
¢þ
>WENV170935848
MDTG01264783
[MDTG] marine metagenome; seawater
4075
3991
-
Leu
TAG
[ENA]
¢þ
>C181056024
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
824803
824887
+
Leu
TAG
-
¡û
>C181185213
CP029789
Gammaproteobacteria
Psychrobacter sp. YP14 [CP029789]
2064256
2064340
+
Leu
TAG
-
¡û
>C181185214
CP029789
Gammaproteobacteria
Psychrobacter sp. YP14 [CP029789]
2064605
2064689
+
Leu
TAG
-
¡û
>C191163843
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
2295998
2296082
+
Leu
TAG
-
¡û
>W141552154
JHOL01000070
Gammaproteobacteria
Psychrobacter sp. 310(2012) [JHOL]
410
326
-
Leu
TAG
[ENA]
¡û
>W09103326
AAJC01000019
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
8082
8166
+
Leu
TAG
[ENA]
¡û
>W09105582
AAPX01000017
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [AAPX]
39148
39064
-
Leu
TAG
[ENA]
¡û
>W09105583
AAPX01000017
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [AAPX]
38789
38705
-
Leu
TAG
[ENA]
¡û
>W141701335
JMKP01000010
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 [JMKP]
17922
17838
-
Leu
TAG
[ENA]
¡û
>W141701336
JMKP01000010
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 [JMKP]
17639
17555
-
Leu
TAG
[ENA]
¡û
>W1910372471
FUGD01000037
Gammaproteobacteria
Psychrobacter pasteurii CIP 110853 [FUGD]
36161
36245
+
Leu
TAG
[ENA]
¡û
>W1910372533
FUGE01000182
Gammaproteobacteria
Psychrobacter piechaudii CIP 110854 [FUGE]
493
577
+
Leu
TAG
[ENA]
¡û
>W1910377600
FUKN01000013
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
180822
180738
-
Leu
TAG
[ENA]
¡û
>W1910891644
NEXR01000003
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
192607
192523
-
Leu
TAG
[ENA]
¡û
>W1910891761
NEXU01000006
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
10616
10532
-
Leu
TAG
[ENA]
¡û
>W1911203633
NRGY01000001
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
795400
795484
+
Leu
TAG
[ENA]
¡û
>W1911397571
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
2650296
2650380
+
Leu
TAG
[ENA]
¡û
>W1911397572
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
2650653
2650737
+
Leu
TAG
[ENA]
¡û
>W1911534877
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
2043617
2043533
-
Leu
TAG
[ENA]
¡û
>W1810155473
PJAS01000072
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
80339
80423
+
Leu
TAG
[ENA]
¡û
>W1810155485
PJAT01000017
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
2735
2651
-
Leu
TAG
[ENA]
¡û
>W1810156170
PJBD01000008
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
50272
50356
+
Leu
TAG
[ENA]
¡û
>W1810156341
PJBF01000059
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
148039
147955
-
Leu
TAG
[ENA]
¡û
>W1810156439
PJBH01000068
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
154892
154976
+
Leu
TAG
[ENA]
¡û
>W1810157263
PJBU01000111
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
83774
83690
-
Leu
TAG
[ENA]
¡û
>W1810157361
PJBX01000110
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
10527
10443
-
Leu
TAG
[ENA]
¡û
>W1810157431
PJBY01000100
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
32352
32268
-
Leu
TAG
[ENA]
¡û
>W1810596392
QGGM01000003
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
341966
342050
+
Leu
TAG
[ENA]
¡û
>W1810671428
QJSU01000002
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
163261
163177
-
Leu
TAG
[ENA]
¡û
>W1810692663
QLKS01000002
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
126188
126104
-
Leu
TAG
[ENA]
¡û
>C151097237
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
2457216
2457132
-
Leu
TAG
-
¡û
>W11163484
AFHU01000168
Gammaproteobacteria
Psychrobacter sp. 1501(2011) [AFHU]
3551
3635
+
Leu
TAG
[ENA]
¡û
>W11163485
AFHU01000168
Gammaproteobacteria
Psychrobacter sp. 1501(2011) [AFHU]
3816
3900
+
Leu
TAG
[ENA]
¡û
>C161042737
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
2148097
2148181
+
Leu
TAG
-
¡û
>C161042785
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
2195836
2195920
+
Leu
TAG
[Ensembl]
¡û
>C161079290
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
945512
945428
-
Leu
TAG
[Ensembl]
¡û
>W121043515
AHVZ01000022
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
193275
193359
+
Leu
TAG
[ENA]
¡û
>W1610071734
BCUH01000010
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
52050
52134
+
Leu
TAG
[ENA]
¡û
>W1610071735
BCUH01000010
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
52333
52417
+
Leu
TAG
[ENA]
¡û
>W1610112401
CZJV02000094
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
63007
63091
+
Leu
TAG
[ENA]
¡û
>C131017384
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
2068528
2068612
+
Leu
TAG
[Ensembl]
¡û
>W1610632733
LIQB01000003
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
627829
627913
+
Leu
TAG
[ENA]
¡û
>W1610642044
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
1006021
1005937
-
Leu
TAG
[ENA]
¡û
>W1610642092
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
1022237
1022153
-
Leu
TAG
[ENA]
¡û
>W1610752314
LNDJ01000013
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
25372
25456
+
Leu
TAG
[ENA]
¡û
>W1610774093
LNUO01000125
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
18838
18922
+
Leu
TAG
[ENA]
¡û
>W1611011835
LXWA01000031
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
161433
161517
+
Leu
TAG
[ENA]
¡û
>W1710068936
BCUH01000010
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
52050
52134
+
Leu
TAG
[ENA]
¡û
>W1710068937
BCUH01000010
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
52333
52417
+
Leu
TAG
[ENA]
¡û
>W1710115105
CZJV02000094
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
63007
63091
+
Leu
TAG
[ENA]
¡û
>W1710513807
FNAL01000004
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
99
15
-
Leu
TAG
[ENA]
¡û
>W1710767165
LIQB01000003
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
627829
627913
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK