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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95906 (19 seq.)
>C171000433
CP007121
Thermotogota
Thermosipho sp. 1070 [CP007121]
1454977
1455061
+
Leu
CAG
-
¡û
>C171000745
CP007223
Thermotogota
Thermosipho sp. 1063 [CP007223]
1440819
1440903
+
Leu
CAG
-
¡û
>w019752
AAUK01000022
Thermotogota
Fervidobacterium nodosum Rt17-B1 [AAUK]
21325
21244
-
Leu
CAG
[ENA]
¡û
>WENV180013973
FPIC01019508
[FPIC] soil metagenome; Soil
83
1
-
Leu
CAG
[ENA]
¢þ
>WENV180014378
FQKF010001006
[FQKF] soil metagenome; Soil
644
726
+
Leu
CAG
[ENA]
¢þ
>WENV181226152
OFDK01000112
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
24982
24898
-
Leu
CAG
[ENA]
¢þ
>WENV181285305
OFGS01000001
[OFGS] hot springs metagenome; Water and soil
184692
184776
+
Leu
CAG
[ENA]
¢þ
>C08004988
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
1929272
1929356
+
Leu
CAG
[Ensembl]
¡û
>W1910573578
JPMH01000020
Thermotogota
Fervidobacterium sp. SC_NGM5_G05 [JPMH]
13229
13313
+
Leu
CAG
[ENA]
¡û
>W1511355456
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
1092992
1092908
-
Leu
CAG
[ENA]
¡û
>C121009899
CP003260
Thermotogota
Fervidobacterium pennivorans DSM 9078 [CP003260]
2146876
2146960
+
Leu
CAG
[Ensembl]
¡û
>C161034971
CP011393
Thermotogota
Fervidobacterium pennivorans DYC [CP011393]
1619275
1619359
+
Leu
CAG
[Ensembl]
¡û
>C161071288
CP014334
Thermotogota
Fervidobacterium islandicum AW-1 [CP014334]
2217591
2217675
+
Leu
CAG
[Ensembl]
¡û
>W121010815
AGJO01000001
Thermotogota
Fervidobacterium pennivorans DSM 9078 [AGJO]
34735
34651
-
Leu
CAG
[ENA]
¡û
>W1710517620
FNDL01000032
Thermotogota
Fervidobacterium changbaicum [FNDL]
10462
10378
-
Leu
CAG
[ENA]
¡û
>W1710593328
FRDJ01000001
Thermotogota
Fervidobacterium gondwanense DSM 13020 [FRDJ]
274241
274157
-
Leu
CAG
[ENA]
¡û
>W1710701258
LBEX01000018
Thermotogota
Thermosipho sp. 1074 [LBEX]
117624
117708
+
Leu
CAG
[ENA]
¡û
>W1710701302
LBEY01000032
Thermotogota
Thermosipho sp. 1223 [LBEY]
117798
117882
+
Leu
CAG
[ENA]
¡û
>W1710701348
LBFC01000022
Thermotogota
Thermosipho affectus [LBFC]
117650
117734
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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