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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95925 (107 seq.)
>WENV180000191
FLNU01000386
[FLNU] bioreactor metagenome; Moose rumen
874
791
-
Tyr
GTA
[ENA]
¡û
>WENV180003127
FLNY01004995
[FLNY] bioreactor metagenome; Moose rumen
53562
53646
+
Tyr
GTA
[ENA]
¡û
>WENV180003144
FLNY01005021
[FLNY] bioreactor metagenome; Moose rumen
1679
1596
-
Tyr
GTA
[ENA]
¡û
>WENV180094752
MTBK01028195
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
22836
22753
-
Tyr
GTA
[ENA]
¡û
>WENV180191710
OAXJ01000413
[OAXJ] human gut metagenome; faeces
44745
44828
+
Tyr
GTA
[ENA]
¡û
>WENV180191761
OAXJ01000505
[OAXJ] human gut metagenome; faeces
22761
22844
+
Tyr
GTA
[ENA]
¡û
>WENV180200739
OBAF01000043
[OBAF] human gut metagenome; human gut
9667
9750
+
Tyr
GTA
[ENA]
¡û
>WENV180215623
OBAQ01002556
[OBAQ] human gut metagenome; human gut
9667
9750
+
Tyr
GTA
[ENA]
¡û
>WENV180322258
OBKR01001809
[OBKR] human gut metagenome; feces
9934
9851
-
Tyr
GTA
[ENA]
¡û
>WENV180323906
OBKR01096579
[OBKR] human gut metagenome; feces
127
44
-
Tyr
GTA
[ENA]
¡û
>WENV180427615
OBWB01000080
[OBWB] human gut metagenome; faeces
1561
1477
-
Tyr
GTA
[ENA]
¡û
>WENV180427667
OBWB01000126
[OBWB] human gut metagenome; faeces
64327
64411
+
Tyr
GTA
[ENA]
¡û
>WENV180429935
OBWE01037210
[OBWE] human gut metagenome; faeces
221
138
-
Tyr
GTA
[ENA]
¡û
>WENV180432632
OBWI01016061
[OBWI] human gut metagenome; faeces
547
631
+
Tyr
GTA
[ENA]
¡û
>WENV180448772
OBXF01000304
[OBXF] human gut metagenome; faeces
4180
4097
-
Tyr
GTA
[ENA]
¡û
>WENV180448781
OBXF01000310
[OBXF] human gut metagenome; faeces
22805
22721
-
Tyr
GTA
[ENA]
¡û
>WENV180502246
OCAL01000250
[OCAL] human gut metagenome; faeces
13994
13911
-
Tyr
GTA
[ENA]
¡û
>WENV180539989
OCHP01228311
[OCHP] human gut metagenome; human gut
88
5
-
Tyr
GTA
[ENA]
¡û
>WENV180540937
OCHR01017298
[OCHR] human gut metagenome; human gut
932
1015
+
Tyr
GTA
[ENA]
¡û
>WENV180542641
OCHT01000609
[OCHT] human gut metagenome; human gut
3632
3549
-
Tyr
GTA
[ENA]
¡û
>WENV180609917
OCPV01027456
[OCPV] human gut metagenome; human gut
252
335
+
Tyr
GTA
[ENA]
¡û
>WENV180610124
OCPV01099871
[OCPV] human gut metagenome; human gut
173
90
-
Tyr
GTA
[ENA]
¡û
>WENV180617362
OCQA01008993
[OCQA] human gut metagenome; human gut
2376
2292
-
Tyr
GTA
[ENA]
¡û
>WENV180620184
OCQB01037115
[OCQB] human gut metagenome; human gut
224
141
-
Tyr
GTA
[ENA]
¡û
>WENV180630963
OCQT01280749
[OCQT] human gut metagenome; human gut
1
84
+
Tyr
GTA
[ENA]
¡û
>WENV180648627
OCSJ01056551
[OCSJ] human gut metagenome; human gut
223
307
+
Tyr
GTA
[ENA]
¡û
>WENV180649192
OCSK01006390
[OCSK] human gut metagenome; human gut
1646
1729
+
Tyr
GTA
[ENA]
¡û
>WENV180650615
OCSZ01000073
[OCSZ] human gut metagenome; human gut
1729
1812
+
Tyr
GTA
[ENA]
¡û
>WENV180736854
ODHC01000329
[ODHC] human metagenome; G_DNA_Stool
16904
16821
-
Tyr
GTA
[ENA]
¡û
>WENV180737315
ODHC01002120
[ODHC] human metagenome; G_DNA_Stool
12908
12991
+
Tyr
GTA
[ENA]
¡û
>WENV180755827
ODHV01000680
[ODHV] human metagenome; G_DNA_Stool
1583
1499
-
Tyr
GTA
[ENA]
¡û
>WENV180818085
ODJQ01007672
[ODJQ] human metagenome; G_DNA_Stool
1
85
+
Tyr
GTA
[ENA]
¡û
>WENV180850237
ODKV01003783
[ODKV] human metagenome; G_DNA_Stool
2028
2111
+
Tyr
GTA
[ENA]
¡û
>WENV180872425
ODLO01020056
[ODLO] human metagenome; G_DNA_Stool
126
209
+
Tyr
GTA
[ENA]
¡û
>WENV180894387
ODMR01071885
[ODMR] human metagenome; G_DNA_Stool
112
28
-
Tyr
GTA
[ENA]
¡û
>WENV180894395
ODMR01075918
[ODMR] human metagenome; G_DNA_Stool
223
140
-
Tyr
GTA
[ENA]
¡û
>WENV180918698
ODTG01001520
[ODTG] human metagenome; G_DNA_Stool
235
151
-
Tyr
GTA
[ENA]
¡û
>WENV181004502
ODVY01000054
[ODVY] human metagenome; G_DNA_Stool
95227
95144
-
Tyr
GTA
[ENA]
¡û
>WENV181004672
ODVY01000216
[ODVY] human metagenome; G_DNA_Stool
84773
84857
+
Tyr
GTA
[ENA]
¡û
>WENV181028896
ODXE01029600
[ODXE] human metagenome; G_DNA_Stool
517
601
+
Tyr
GTA
[ENA]
¡û
>WENV181031665
ODXK01002413
[ODXK] human metagenome; G_DNA_Stool
3794
3877
+
Tyr
GTA
[ENA]
¡û
>WENV181418725
OGCM01009416
[OGCM] human gut metagenome; human gut
4248
4332
+
Tyr
GTA
[ENA]
¡û
>WENV181478713
OGFG01000056
[OGFG] metagenome; Human gut stool
110245
110162
-
Tyr
GTA
[ENA]
¡û
>WENV181620317
OGME01015833
[OGME] metagenome; Human gut stool
165
81
-
Tyr
GTA
[ENA]
¡û
>WENV181639608
OGND01014974
[OGND] metagenome; Human gut stool
164
81
-
Tyr
GTA
[ENA]
¡û
>WENV181678318
OGOR01000164
[OGOR] human gut metagenome; faeces
58498
58415
-
Tyr
GTA
[ENA]
¡û
>WENV181681238
OGOT01006290
[OGOT] human gut metagenome; faeces
621
704
+
Tyr
GTA
[ENA]
¡û
>WENV181682750
OGOU01018731
[OGOU] human gut metagenome; faeces
1268
1185
-
Tyr
GTA
[ENA]
¡û
>WENV181888326
OGXM01001729
[OGXM] human gut metagenome; faeces
1569
1486
-
Tyr
GTA
[ENA]
¡û
>WENV181924027
OGYL01003846
[OGYL] human gut metagenome; faeces
4089
4173
+
Tyr
GTA
[ENA]
¡û
>WENV181938504
OGYW01009923
[OGYW] human gut metagenome; faeces
166
82
-
Tyr
GTA
[ENA]
¡û
>WENV182032291
OHCU01001832
[OHCU] human gut metagenome; feces
1669
1752
+
Tyr
GTA
[ENA]
¡û
>WENV182145778
OHKY01006494
[OHKY] human gut metagenome; feces
339
256
-
Tyr
GTA
[ENA]
¡û
>WENV182157549
OHLX01001133
[OHLX] human gut metagenome; feces
4723
4639
-
Tyr
GTA
[ENA]
¡û
>WENV182398894
OIEN01013962
[OIEN] human gut metagenome; human gut
1386
1303
-
Tyr
GTA
[ENA]
¡û
>WENV182407928
OIFE01000189
[OIFE] human gut metagenome; human gut
38821
38738
-
Tyr
GTA
[ENA]
¡û
>WENV182508752
OIVT01001147
[OIVT] human gut metagenome; faeces
340
423
+
Tyr
GTA
[ENA]
¡û
>WENV182511764
OIWL01000501
[OIWL] human gut metagenome; faeces
47152
47069
-
Tyr
GTA
[ENA]
¡û
>WENV182524264
OIWT01000105
[OIWT] human gut metagenome; faeces
63150
63233
+
Tyr
GTA
[ENA]
¡û
>WENV182536060
OIXH01000134
[OIXH] human gut metagenome; faeces
53150
53067
-
Tyr
GTA
[ENA]
¡û
>WENV182616876
OJKC01073872
[OJKC] metagenome; faeces
175
91
-
Tyr
GTA
[ENA]
¡û
>WENV182635092
OJKY01036779
[OJKY] metagenome; faeces
848
931
+
Tyr
GTA
[ENA]
¡û
>WENV182656908
OJMK01000129
[OJMK] human gut metagenome; feces
41970
42053
+
Tyr
GTA
[ENA]
¡û
>WENV182661975
OJMN01007157
[OJMN] human gut metagenome; feces
3851
3934
+
Tyr
GTA
[ENA]
¡û
>WENV182667475
OJNI01003546
[OJNI] human gut metagenome; feces
4799
4716
-
Tyr
GTA
[ENA]
¡û
>WENV182669896
OJNK01002089
[OJNK] human gut metagenome; human gut
8063
8146
+
Tyr
GTA
[ENA]
¡û
>WENV182675850
OJNQ01022592
[OJNQ] human gut metagenome; feces
1703
1786
+
Tyr
GTA
[ENA]
¡û
>WENV182677291
OJNR01013040
[OJNR] human gut metagenome; human gut
246
163
-
Tyr
GTA
[ENA]
¡û
>WENV182694273
OJOI01000319
[OJOI] human gut metagenome; human gut
29480
29563
+
Tyr
GTA
[ENA]
¡û
>WENV182754241
OJRD01003239
[OJRD] human gut metagenome; stool sample
3432
3349
-
Tyr
GTA
[ENA]
¡û
>WENV182756242
OJRG01000128
[OJRG] human gut metagenome; stool sample
56045
56128
+
Tyr
GTA
[ENA]
¡û
>WENV182960716
OKWJ01042901
[OKWJ] human gut metagenome; human gut
198
114
-
Tyr
GTA
[ENA]
¡û
>WENV182969550
OKXB01037631
[OKXB] human gut metagenome; human gut
324
241
-
Tyr
GTA
[ENA]
¡û
>WENV183039920
OLGB01024841
[OLGB] human gut metagenome; faeces
1937
2020
+
Tyr
GTA
[ENA]
¡û
>WENV183045635
OLGE01018367
[OLGE] human gut metagenome; faeces
2777
2694
-
Tyr
GTA
[ENA]
¡û
>WENV183050338
OLGI01000330
[OLGI] human gut metagenome; faeces
45471
45388
-
Tyr
GTA
[ENA]
¡û
>WENV183073377
OLIT01046187
[OLIT] human gut metagenome; feces
154
71
-
Tyr
GTA
[ENA]
¡û
>WENV183373076
OLXX01024618
[OLXX] human gut metagenome; feces
141
58
-
Tyr
GTA
[ENA]
¡û
>WENV183403553
OLZW01000385
[OLZW] human gut metagenome; feces
1276
1193
-
Tyr
GTA
[ENA]
¡û
>WENV183418694
OMAY01006732
[OMAY] human gut metagenome; feces
1568
1484
-
Tyr
GTA
[ENA]
¡û
>WENV183429351
OMBO01015239
[OMBO] human gut metagenome; feces
179
96
-
Tyr
GTA
[ENA]
¡û
>WENV183435249
OMCA01003753
[OMCA] human gut metagenome; feces
3475
3559
+
Tyr
GTA
[ENA]
¡û
>WENV183506880
OMGY01003891
[OMGY] human gut metagenome; human gut
1599
1516
-
Tyr
GTA
[ENA]
¡û
>WENV183599086
OODG01022435
[OODG] human gut metagenome; human gut
869
952
+
Tyr
GTA
[ENA]
¡û
>WENV183610936
OODS01018833
[OODS] human gut metagenome; human gut
1050
967
-
Tyr
GTA
[ENA]
¡û
>WENV170028631
CDYF01009271
[CDYF] gut metagenome; human stools
564
649
+
Tyr
GTA
[ENA]
¡û
>WENV170031087
CDYI01039664
[CDYI] gut metagenome; human stools
218
133
-
Tyr
GTA
[ENA]
¡û
>WENV170031230
CDYI01046539
[CDYI] gut metagenome; human stools
236
151
-
Tyr
GTA
[ENA]
¡û
>WENV170032105
CDYJ01036258
[CDYJ] gut metagenome; human stools
490
575
+
Tyr
GTA
[ENA]
¡û
>WENV170033583
CDYK01028511
[CDYK] gut metagenome; human stools
144
59
-
Tyr
GTA
[ENA]
¡û
>WENV170033806
CDYK01033356
[CDYK] gut metagenome; human stools
245
160
-
Tyr
GTA
[ENA]
¡û
>WENV170635896
JFBN01011705
[JFBN] chicken gut metagenome; ceca of Broiler chicken
7699
7616
-
Tyr
GTA
[ENA]
¡û
>WENV170719003
LSQX01098647
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
44932
45017
+
Tyr
GTA
[ENA]
¡û
>WENV170776626
LXOW01189057
[LXOW] bovine gut metagenome; Cow rumen
1285
1370
+
Tyr
GTA
[ENA]
¡û
>WENV170777121
LXOW01247789
[LXOW] bovine gut metagenome; Cow rumen
816
901
+
Tyr
GTA
[ENA]
¡û
>W2010267492
CABKQP020000003
Bacteroidota
Coprobacter fastidiosus [CABKQP]
224774
224690
-
Tyr
GTA
[ENA]
¡û
>W2010267495
CABKQP020000003
Bacteroidota
Coprobacter fastidiosus [CABKQP]
116280
116197
-
Tyr
GTA
[ENA]
¡û
>W2010273691
CABKUW020000019
Bacteroidota
Bacteroidales bacterium [CABKUW]
507485
507568
+
Tyr
GTA
[ENA]
¡û
>W2010273693
CABKUW020000019
Bacteroidota
Bacteroidales bacterium [CABKUW]
595629
595712
+
Tyr
GTA
[ENA]
¡û
>W2011389361
RBXN01000004
Bacteroidota
Coprobacter fastidiosus NSB1 [RBXN]
91544
91628
+
Tyr
GTA
[ENA]
¡û
>W2011389364
RBXN01000004
Bacteroidota
Coprobacter fastidiosus NSB1 [RBXN]
197879
197962
+
Tyr
GTA
[ENA]
¡û
>C211010869
AP023322
Bacteroidota
Coprobacter secundus subsp. similis 2CBH44 [AP023322]
3127555
3127638
+
Tyr
GTA
-
¡û
>C211010871
AP023322
Bacteroidota
Coprobacter secundus subsp. similis 2CBH44 [AP023322]
3242611
3242694
+
Tyr
GTA
-
¡û
>C241012553
AP028032
Bacteroidota
Coprobacter fastidiosus JCM 33896 [AP028032]
2019138
2019054
-
Tyr
GTA
-
¡û
>C241012556
AP028032
Bacteroidota
Coprobacter fastidiosus JCM 33896 [AP028032]
1912803
1912720
-
Tyr
GTA
-
¡û
>W1510752899
CYPV01000054
Bacteroidota
Gabonia massiliensis GM3 [CYPV]
362020
362103
+
Tyr
GTA
[ENA]
¡û
>W1510752906
CYPV01000055
Bacteroidota
Gabonia massiliensis GM3 [CYPV]
12898
12981
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK