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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95929 (9 seq.)
>WENV180014509
FQKF010030967
[FQKF] soil metagenome; Soil
1360
1275
-
Leu
GAG
[ENA]
¡û
>WENV181408055
OGCH01000460
[OGCH] hot springs metagenome; hot springs
19770
19685
-
Leu
GAG
[ENA]
¡û
>WENV181408607
OGCH01006491
[OGCH] hot springs metagenome; hot springs
99
184
+
Leu
GAG
[ENA]
¡û
>WENV181411033
OGCI01011088
[OGCI] hot springs metagenome; Hot spring water
2860
2775
-
Leu
GAG
[ENA]
¡û
>WENV181415751
OGCL01023513
[OGCL] hot springs metagenome; Hot spring water
1397
1312
-
Leu
GAG
[ENA]
¡û
>WENV170000725
AFSR01002424
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
91
6
-
Leu
GAG
[ENA]
¡û
>WENV170000847
AFSR01006355
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
8888
8803
-
Leu
GAG
[ENA]
¡û
>WENV11101068
AFSR01002424
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
91
6
-
Leu
GAG
[ENA]
¡û
>WENV11101190
AFSR01006355
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
8888
8803
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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