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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95988 (80 seq.)
>W1710891796
LNDA01000072
Actinomycetota
Nocardia jinanensis NBRC 108249 [LNDA]
62540
62456
-
Leu
TAG
[ENA]
¡û
>W1710935816
LOKT01000002
Actinomycetota
Nocardia donostiensis [LOKT]
103454
103370
-
Leu
TAG
[ENA]
¡û
>W1711049871
LRRB01000198
Actinomycetota
Aldersonia kunmingensis [LRRB]
19235
19317
+
Leu
TAG
[ENA]
¡û
>W1711739103
MUBO01000202
Actinomycetota
Streptomyces daghestanicus [MUBO]
58961
59043
+
Leu
TAG
[ENA]
¡û
>W1711747308
MUKP01000009
Actinomycetota
Nocardia donostiensis [MUKP]
106799
106715
-
Leu
TAG
[ENA]
¡û
>W1711750423
MUMY01000016
Actinomycetota
Nocardia donostiensis [MUMY]
104228
104144
-
Leu
TAG
[ENA]
¡û
>W1711784501
MVPX01000151
Actinomycetota
Gordonia sp. i37 [MVPX]
42284
42368
+
Leu
TAG
[ENA]
¡û
>W131186281
ARVZ01000001
Actinomycetota
Gordonia polyisoprenivorans HW436 [ARVZ]
3389546
3389462
-
Leu
TAG
[ENA]
¡û
>W131239454
BANR01000022
Actinomycetota
Gordonia aichiensis NBRC 108223 [BANR]
66646
66562
-
Leu
TAG
[ENA]
¡û
>C014853
AP006618
Actinomycetota
Nocardia farcinica IFM 10152 [AP006618]
1401027
1400946
-
Leu
TAG
[Ensembl]
¡û
>W141231363
BATZ01000020
Actinomycetota
Nocardia otitidiscaviarum IFM 11049 [BATZ]
200497
200413
-
Leu
TAG
[ENA]
¡û
>WENV170811616
MDSW01169858
[MDSW] marine metagenome; seawater
934
852
-
Leu
TAG
[ENA]
¢þ
>WENV170888573
MDTC01260022
[MDTC] marine metagenome; seawater
1357
1439
+
Leu
TAG
[ENA]
¢þ
>WENV170897782
MDTD01117137
[MDTD] marine metagenome; seawater
37107
37025
-
Leu
TAG
[ENA]
¢þ
>C181139067
CP026746
Actinomycetota
Nocardia cyriacigeorgica MDA3349 [CP026746]
88430
88512
+
Leu
TAG
-
¡û
>C181200276
CP031418
Actinomycetota
Nocardia farcinica W6977 [CP031418]
2259357
2259439
+
Leu
TAG
-
¡û
>C191219093
LR215973
Actinomycetota
Nocardia cyriacigeorgica 3012STDY6756504 [LR215973]
6086128
6086044
-
Leu
TAG
-
¡û
>W141702541
JMLO01000002
Actinomycetota
Rhodococcus sp. UNC363MFTsu5.1 [JMLO]
33628
33544
-
Leu
TAG
[ENA]
¡û
>W141702692
JMLQ01000004
Actinomycetota
Rhodococcus sp. UNC23MFCrub1.1 [JMLQ]
24571
24487
-
Leu
TAG
[ENA]
¡û
>W141759291
JNZF01000007
Actinomycetota
Nocardia carnea carneus [JNZF]
188383
188299
-
Leu
TAG
[ENA]
¡û
>W141760947
JOAJ01000016
Actinomycetota
Nocardia rhamnosiphila [JOAJ]
10552
10470
-
Leu
TAG
[ENA]
¡û
>W141767067
JOEJ01000016
Actinomycetota
Nocardia rhamnosiphila [JOEJ]
10630
10548
-
Leu
TAG
[ENA]
¡û
>W1911180176
NQOE01000001
Actinomycetota
Gordonia polyisoprenivorans herm_1 [NQOE]
41601
41683
+
Leu
TAG
[ENA]
¡û
>W1911422434
NXEG01000010
Actinomycetota
Nocardia farcinica CNM20091955 [NXEG]
51721
51803
+
Leu
TAG
[ENA]
¡û
>W1911422482
NXEH01000011
Actinomycetota
Nocardia farcinica CNM20080921 [NXEH]
115328
115246
-
Leu
TAG
[ENA]
¡û
>W1911492034
OBDL01000007
Actinomycetota
Rhodococcus sp. OK270 [OBDL]
232178
232262
+
Leu
TAG
[ENA]
¡û
>W1911573026
PDDW01000001
Actinomycetota
Nocardia sp. FDAARGOS_372 [PDDW]
6230805
6230723
-
Leu
TAG
[ENA]
¡û
>W1810282675
PSZF01000026
Actinomycetota
Nocardia cyriacigeorgica MDA3732 [PSZF]
20107
20191
+
Leu
TAG
[ENA]
¡û
>W1810477667
QAOZ01000007
Actinomycetota
Rhodococcus sp. OK611 [QAOZ]
232178
232262
+
Leu
TAG
[ENA]
¡û
>W1810608621
QGTL01000008
Actinomycetota
Nocardia neocaledoniensis DSM 44717 [QGTL]
16685
16603
-
Leu
TAG
[ENA]
¡û
>W1810720308
QNRE01000013
Actinomycetota
Nocardia puris DSM 44599 [QNRE]
44101
44019
-
Leu
TAG
[ENA]
¡û
>SRA1014165
SRR023845.22967
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
122
38
-
Leu
TAG
[SRA]
>W1510015498
BBRB01000001
Actinomycetota
Demequina sediminicola NBRC 105855 [BBRB]
103273
103357
+
Leu
TAG
[ENA]
¡û
>W1510015719
BBRG01000001
Actinomycetota
Demequina globuliformis NBRC 106266 [BBRG]
403108
403192
+
Leu
TAG
[ENA]
¡û
>C121006202
CP003119
Actinomycetota
Gordonia polyisoprenivorans VH2 [CP003119]
2125234
2125318
+
Leu
TAG
[Ensembl]
¡û
>C121016078
FO082843
Actinomycetota
Nocardia cyriacigeorgica GUH-2 [FO082843]
1393343
1393259
-
Leu
TAG
[Ensembl]
¡û
>C161106817
LN868938
Actinomycetota
Nocardia farcinica NCTC11134 [LN868938]
2921407
2921489
+
Leu
TAG
[Ensembl]
¡û
>W121125986
BAGK01000212
Actinomycetota
Nocardia thailandica NBRC 100428 [BAGK]
62012
61930
-
Leu
TAG
[ENA]
¡û
>W121125125
BAFU01000029
Actinomycetota
Nocardia brevicatena NBRC 12119 [BAFU]
47050
46966
-
Leu
TAG
[ENA]
¡û
>W121125177
BAFV01000018
Actinomycetota
Nocardia carnea NBRC 14403 [BAFV]
188359
188275
-
Leu
TAG
[ENA]
¡û
>W121125336
BAFY01000072
Actinomycetota
Nocardia cyriacigeorgica NBRC 100375 [BAFY]
8862
8778
-
Leu
TAG
[ENA]
¡û
>W121125590
BAGD01000044
Actinomycetota
Nocardia otitidiscaviarum NBRC 14405 [BAGD]
37449
37365
-
Leu
TAG
[ENA]
¡û
>W121125656
BAGE01000025
Actinomycetota
Nocardia paucivorans NBRC 100373 [BAGE]
21042
20958
-
Leu
TAG
[ENA]
¡û
>W121125905
BAGJ01000045
Actinomycetota
Nocardia testacea NBRC 100365 [BAGJ]
3383
3299
-
Leu
TAG
[ENA]
¡û
>W1610078983
BDBH01000007
Actinomycetota
Nocardia harenae NBRC 108248 [BDBH]
128319
128235
-
Leu
TAG
[ENA]
¡û
>W1610079070
BDBJ01000031
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
86060
85978
-
Leu
TAG
[ENA]
¡û
>W1610079336
BDBO01000065
Actinomycetota
Nocardia jinanensis NBRC 108249 [BDBO]
119118
119202
+
Leu
TAG
[ENA]
¡û
>W1610079759
BDBW01000036
Actinomycetota
Nocardia puris NBRC 108233 [BDBW]
13796
13714
-
Leu
TAG
[ENA]
¡û
>W1610079809
BDBX01000033
Actinomycetota
Nocardia sienata NBRC 100364 [BDBX]
48670
48752
+
Leu
TAG
[ENA]
¡û
>W1610079910
BDBZ01000019
Actinomycetota
Nocardia speluncae NBRC 108251 [BDBZ]
48289
48373
+
Leu
TAG
[ENA]
¡û
>W1610080108
BDCD01000017
Actinomycetota
Nocardia yamanashiensis NBRC 100130 [BDCD]
147949
148033
+
Leu
TAG
[ENA]
¡û
>W1610080179
BDCE01000046
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
103393
103309
-
Leu
TAG
[ENA]
¡û
>W1610080319
BDCG01000028
Actinomycetota
Nocardia flavorosea NBRC 108225 [BDCG]
74176
74258
+
Leu
TAG
[ENA]
¡û
>W1610080353
BDCH01000017
Actinomycetota
Nocardia crassostreae [BDCH]
249725
249809
+
Leu
TAG
[ENA]
¡û
>W1610080481
BDCJ01000027
Actinomycetota
Nocardia grenadensis NBRC 108939 [BDCJ]
12459
12375
-
Leu
TAG
[ENA]
¡û
>W1610080576
BDCL01000064
Actinomycetota
Nocardia rhamnosiphila NBRC 108938 [BDCL]
49760
49842
+
Leu
TAG
[ENA]
¡û
>W1610080916
BDCU01000048
Actinomycetota
Nocardia fusca NBRC 14340 [BDCU]
46738
46820
+
Leu
TAG
[ENA]
¡û
>W121123670
BAED01000070
Actinomycetota
Gordonia amarae NBRC 15530 [BAED]
8828
8744
-
Leu
TAG
[ENA]
¡û
>W121123912
BAEI01000074
Actinomycetota
Gordonia polyisoprenivorans NBRC 16320 [BAEI]
23796
23712
-
Leu
TAG
[ENA]
¡û
>W121124274
BAFB01000049
Actinomycetota
Gordonia otitidis NBRC 100426 [BAFB]
3577
3493
-
Leu
TAG
[ENA]
¡û
>W1610752161
LNDA01000072
Actinomycetota
Nocardia jinanensis NBRC 108249 [LNDA]
62540
62456
-
Leu
TAG
[ENA]
¡û
>W1610891000
LRRB01000198
Actinomycetota
Aldersonia kunmingensis [LRRB]
19235
19317
+
Leu
TAG
[ENA]
¡û
>W1710071999
BCXA01000043
Actinomycetota
Rhodococcus maanshanensis NBRC 100610 [BCXA]
35953
35869
-
Leu
TAG
[ENA]
¡û
>W1710072295
BCXG01000008
Actinomycetota
Rhodococcus tukisamuensis NBRC 100609 [BCXG]
32312
32230
-
Leu
TAG
[ENA]
¡û
>W1710077542
BDBH01000007
Actinomycetota
Nocardia harenae NBRC 108248 [BDBH]
128319
128235
-
Leu
TAG
[ENA]
¡û
>W1710077629
BDBJ01000031
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
86060
85978
-
Leu
TAG
[ENA]
¡û
>W1710077895
BDBO01000065
Actinomycetota
Nocardia jinanensis NBRC 108249 [BDBO]
119118
119202
+
Leu
TAG
[ENA]
¡û
>W1710078318
BDBW01000036
Actinomycetota
Nocardia puris NBRC 108233 [BDBW]
13796
13714
-
Leu
TAG
[ENA]
¡û
>W1710078368
BDBX01000033
Actinomycetota
Nocardia sienata NBRC 100364 [BDBX]
48670
48752
+
Leu
TAG
[ENA]
¡û
>W1710078469
BDBZ01000019
Actinomycetota
Nocardia speluncae NBRC 108251 [BDBZ]
48289
48373
+
Leu
TAG
[ENA]
¡û
>W1710078667
BDCD01000017
Actinomycetota
Nocardia yamanashiensis NBRC 100130 [BDCD]
147949
148033
+
Leu
TAG
[ENA]
¡û
>W1710078738
BDCE01000046
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
103393
103309
-
Leu
TAG
[ENA]
¡û
>W1710078878
BDCG01000028
Actinomycetota
Nocardia flavorosea NBRC 108225 [BDCG]
74176
74258
+
Leu
TAG
[ENA]
¡û
>W1710078912
BDCH01000017
Actinomycetota
Nocardia crassostreae [BDCH]
249725
249809
+
Leu
TAG
[ENA]
¡û
>W1710079040
BDCJ01000027
Actinomycetota
Nocardia grenadensis NBRC 108939 [BDCJ]
12459
12375
-
Leu
TAG
[ENA]
¡û
>W1710079135
BDCL01000064
Actinomycetota
Nocardia rhamnosiphila NBRC 108938 [BDCL]
49760
49842
+
Leu
TAG
[ENA]
¡û
>W1710079475
BDCU01000048
Actinomycetota
Nocardia fusca NBRC 14340 [BDCU]
46738
46820
+
Leu
TAG
[ENA]
¡û
>W1710513360
FNAB01000010
Actinomycetota
Rhodococcus tukisamuensis [FNAB]
135298
135380
+
Leu
TAG
[ENA]
¡û
>W1710544532
FOAW01000029
Actinomycetota
Rhodococcus maanshanensis [FOAW]
24345
24429
+
Leu
TAG
[ENA]
¡û
>W1710599640
FTOW01000002
Actinomycetota
Nocardia farcinica [FTOW]
227332
227414
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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