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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96049 (105 seq.)
>W1711210233
LXIA01000018
Bacillota
Lentilactobacillus parabuchneri [LXIA]
170537
170620
+
Leu
TAG
[ENA]
¡û
>W1711224723
LXUG01000022
Bacillota
Lentilactobacillus parabuchneri [LXUG]
107926
107843
-
Leu
TAG
[ENA]
¡û
>W1711236377
LYDQ01000022
Bacillota
Lentilactobacillus parabuchneri [LYDQ]
212979
213062
+
Leu
TAG
[ENA]
¡û
>W131241945
BASH01000003
Bacillota
Lentilactobacillus otakiensis JCM 15040 [BASH]
137486
137569
+
Leu
TAG
[ENA]
¡û
>W1711438172
MIQE01000010
Bacillota
Lentilactobacillus sunkii [MIQE]
231
148
-
Leu
TAG
[ENA]
¡û
>W1711685952
MSAS01000020
Bacillota
Lentilactobacillus parabuchneri [MSAS]
259337
259420
+
Leu
TAG
[ENA]
¡û
>W1711686010
MSAT01000024
Bacillota
Lentilactobacillus parabuchneri [MSAT]
169834
169917
+
Leu
TAG
[ENA]
¡û
>W1711686054
MSAU01000017
Bacillota
Lentilactobacillus parabuchneri [MSAU]
90558
90641
+
Leu
TAG
[ENA]
¡û
>W1711686126
MSAV01000033
Bacillota
Lentilactobacillus parabuchneri [MSAV]
66049
66132
+
Leu
TAG
[ENA]
¡û
>W1711686183
MSAW01000051
Bacillota
Lentilactobacillus parabuchneri [MSAW]
8769
8852
+
Leu
TAG
[ENA]
¡û
>W1711686227
MSAX01000020
Bacillota
Lentilactobacillus parabuchneri [MSAX]
20660
20743
+
Leu
TAG
[ENA]
¡û
>W1711686299
MSAY01000023
Bacillota
Lentilactobacillus parabuchneri [MSAY]
68531
68614
+
Leu
TAG
[ENA]
¡û
>W1711686357
MSAZ01000021
Bacillota
Lentilactobacillus parabuchneri [MSAZ]
68531
68614
+
Leu
TAG
[ENA]
¡û
>W1711686415
MSBA01000026
Bacillota
Lentilactobacillus parabuchneri [MSBA]
68531
68614
+
Leu
TAG
[ENA]
¡û
>W1711686473
MSBB01000025
Bacillota
Lentilactobacillus parabuchneri [MSBB]
68531
68614
+
Leu
TAG
[ENA]
¡û
>W1711686516
MSBC01000019
Bacillota
Lentilactobacillus parabuchneri [MSBC]
21402
21485
+
Leu
TAG
[ENA]
¡û
>W1711686588
MSBD01000041
Bacillota
Lentilactobacillus parabuchneri [MSBD]
8775
8858
+
Leu
TAG
[ENA]
¡û
>W1711686644
MSBE01000019
Bacillota
Lentilactobacillus parabuchneri [MSBE]
396230
396313
+
Leu
TAG
[ENA]
¡û
>W1711686706
MSBF01000025
Bacillota
Lentilactobacillus parabuchneri [MSBF]
177954
178037
+
Leu
TAG
[ENA]
¡û
>W1711686763
MSBG01000025
Bacillota
Lentilactobacillus parabuchneri [MSBG]
177954
178037
+
Leu
TAG
[ENA]
¡û
>W1711686820
MSBH01000025
Bacillota
Lentilactobacillus parabuchneri [MSBH]
177954
178037
+
Leu
TAG
[ENA]
¡û
>W1711686862
MSBI01000014
Bacillota
Lentilactobacillus parabuchneri [MSBI]
80841
80924
+
Leu
TAG
[ENA]
¡û
>C171034185
CP014915
Bacillota
Secundilactobacillus paracollinoides TMW 1.1994 [CP014915]
1948592
1948508
-
Leu
TAG
-
¡û
>C171084012
CP018796
Bacillota
Lentilactobacillus parabuchneri FAM21731 [CP018796]
1771524
1771607
+
Leu
TAG
-
¡û
>C171086135
CP018906
Bacillota
Lentilactobacillus curieae CCTCC M 2011381 [CP018906]
1348485
1348568
+
Leu
TAG
-
¡û
>WENV180477989
OBZA01000004
[OBZA] human gut metagenome; faeces
142403
142486
+
Leu
TAG
[ENA]
¢þ
>W141226588
BAKI01000037
Bacillota
Lentilactobacillus farraginis JCM 14108 [BAKI]
11406
11323
-
Leu
TAG
[ENA]
¡û
>WENV170659434
JXWR01005398
[JXWR] soil metagenome; rice field; ambient CO2
489
572
+
Leu
TAG
[ENA]
¢þ
>W09122588
ACGH01000117
Bacillota
Lentilactobacillus buchneri ATCC 11577 [ACGH]
25052
25135
+
Leu
TAG
[ENA]
¡û
>W09122932
ACGP01000098
Bacillota
Lentilactobacillus hilgardii ATCC 8290 [ACGP]
28316
28399
+
Leu
TAG
[ENA]
¡û
>W09300508
ACGG01000105
Bacillota
Lentilactobacillus hilgardii subsp. gravesensis ATCC 27305 [ACGG]
28267
28350
+
Leu
TAG
[ENA]
¡û
>W1910067175
BEXA01000003
Bacillota
Lentilactobacillus kosonis NBRC111893 [BEXA]
81081
80998
-
Leu
TAG
[ENA]
¡û
>W1910870898
NCWS01000038
Bacillota
Lentilactobacillus kefiri OG2 [NCWS]
8559
8642
+
Leu
TAG
[ENA]
¡û
>W1910871366
NCXA01000106
Bacillota
Lentilactobacillus parakefiri KR [NCXA]
267
184
-
Leu
TAG
[ENA]
¡û
>W1910871487
NCXD01000036
Bacillota
Lentilactobacillus kefiri KR [NCXD]
8563
8646
+
Leu
TAG
[ENA]
¡û
>W1910871751
NCXI01000178
Bacillota
Lentilactobacillus parakefiri OG2 [NCXI]
526
609
+
Leu
TAG
[ENA]
¡û
>W1910872034
NDFJ01000002
Bacillota
Lentilactobacillus kefiri Olga [NDFJ]
8665
8748
+
Leu
TAG
[ENA]
¡û
>W1911551349
OVSN01000019
Bacillota
Lentilactobacillus raoultii Marseille-P4006 [OVSN]
54100
54183
+
Leu
TAG
[ENA]
¡û
>W1911631971
PUFL01000077
Bacillota
Lentilactobacillus parakefiri DSM 10551 [PUFL]
593
676
+
Leu
TAG
[ENA]
¡û
>W1911632202
PUFP01000073
Bacillota
Lentilactobacillus buchneri ATCC 4005 [PUFP]
89571
89488
-
Leu
TAG
[ENA]
¡û
>W1911632279
PUFR01000044
Bacillota
Lentilactobacillus hilgardii ATCC 8290 [PUFR]
118428
118511
+
Leu
TAG
[ENA]
¡û
>W1810586573
QFFL01000001
Bacillota
Lentilactobacillus kefiri SGL 13 [QFFL]
835910
835827
-
Leu
TAG
[ENA]
¡û
>W1810830139
QSLO01000008
Bacillota
Fructilactobacillus fructivorans KCTC 3543 = DSM 20203 [QSLO]
105767
105850
+
Leu
TAG
[ENA]
¡û
>C11112245
CP002652
Bacillota
Lentilactobacillus buchneri NRRL B-30929 [CP002652]
1791301
1791218
-
Leu
TAG
[Ensembl]
¡û
>W1511270418
JOJZ01000013
Bacillota
Fructilactobacillus fructivorans DmCS_002 [JOJZ]
101085
101168
+
Leu
TAG
[ENA]
¡û
>W1511393355
JTAL01000003
Bacillota
Lentilactobacillus curieae CCTCC M 2011381 [JTAL]
379349
379432
+
Leu
TAG
[ENA]
¡û
>W11144718
AEQY01000008
Bacillota
Fructilactobacillus fructivorans KCTC 3543 [AEQY]
478744
478827
+
Leu
TAG
[ENA]
¡û
>W121009549
AGEY01000212
Bacillota
Lentilactobacillus parafarraginis F0439 [AGEY]
125
208
+
Leu
TAG
[ENA]
¡û
>W121016894
AGRJ01000067
Bacillota
Lentilactobacillus kisonensis F0435 [AGRJ]
13820
13903
+
Leu
TAG
[ENA]
¡û
>W1610031257
AYYQ01000029
Bacillota
Apilactobacillus ozensis DSM 23829 = JCM 17196 [AYYQ]
40838
40921
+
Leu
TAG
[ENA]
¡û
>W1610031464
AYYV01000086
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [AYYV]
106678
106595
-
Leu
TAG
[ENA]
¡û
>W1610032493
AYZR01000009
Bacillota
Lentilactobacillus senioris DSM 24302 = JCM 17472 [AYZR]
93162
93079
-
Leu
TAG
[ENA]
¡û
>W1610033763
AZDF01000001
Bacillota
Lentilactobacillus hilgardii DSM 20176 = ATCC 8290 [AZDF]
106330
106247
-
Leu
TAG
[ENA]
¡û
>W1610034147
AZDM01000085
Bacillota
Lentilactobacillus buchneri DSM 20057 [AZDM]
210
127
-
Leu
TAG
[ENA]
¡û
>W1610034415
AZDS01000005
Bacillota
Fructilactobacillus fructivorans KCTC 3543 = DSM 20203 [AZDS]
86115
86032
-
Leu
TAG
[ENA]
¡û
>W1610034838
AZEA01000015
Bacillota
Lentilactobacillus sunkii DSM 19904 [AZEA]
12041
11958
-
Leu
TAG
[ENA]
¡û
>W1610034860
AZEB01000008
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [AZEB]
81455
81372
-
Leu
TAG
[ENA]
¡û
>W1610034952
AZED01000013
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [AZED]
107045
106962
-
Leu
TAG
[ENA]
¡û
>W1610035240
AZEI01000078
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [AZEI]
89149
89066
-
Leu
TAG
[ENA]
¡û
>W1610035516
AZEN01000421
Bacillota
Lentilactobacillus parakefiri DSM 10551 [AZEN]
8990
9073
+
Leu
TAG
[ENA]
¡û
>W1610035986
AZEY01000068
Bacillota
Lentilactobacillus diolivorans DSM 14421 [AZEY]
36510
36427
-
Leu
TAG
[ENA]
¡û
>W1610037314
AZFY01000119
Bacillota
Lentilactobacillus farraginis DSM 18382 = JCM 14108 [AZFY]
11450
11367
-
Leu
TAG
[ENA]
¡û
>W1610037355
AZFZ01000001
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [AZFZ]
103207
103124
-
Leu
TAG
[ENA]
¡û
>W1610037933
AZGK01000003
Bacillota
Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865 [AZGK]
168870
168953
+
Leu
TAG
[ENA]
¡û
>W1610044593
BBAR01000001
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [BBAR]
10794
10877
+
Leu
TAG
[ENA]
¡û
>W1610044716
BBAT01000002
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [BBAT]
206569
206652
+
Leu
TAG
[ENA]
¡û
>W1610044748
BBAU01000004
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [BBAU]
83491
83408
-
Leu
TAG
[ENA]
¡û
>W1610044803
BBAV01000006
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [BBAV]
79098
79015
-
Leu
TAG
[ENA]
¡û
>W1610044896
BBAX01000005
Bacillota
Apilactobacillus ozensis DSM 23829 = JCM 17196 [BBAX]
23556
23639
+
Leu
TAG
[ENA]
¡û
>W1610045770
BBBV01000007
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [BBBV]
76096
76013
-
Leu
TAG
[ENA]
¡û
>W1610073210
BCVT01000006
Bacillota
Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865 [BCVT]
306
223
-
Leu
TAG
[ENA]
¡û
>C131001720
CP003043
Bacillota
Lentilactobacillus buchneri subsp. silagei CD034 [CP003043]
1787997
1787914
-
Leu
TAG
[Ensembl]
¡û
>W1610527841
JQAS01000005
Bacillota
Fructilactobacillus fructivorans [JQAS]
104862
104945
+
Leu
TAG
[ENA]
¡û
>W1610528558
JQBI01000022
Bacillota
Fructilactobacillus fructivorans [JQBI]
2868
2785
-
Leu
TAG
[ENA]
¡û
>W1610528619
JQBJ01000173
Bacillota
Lentilactobacillus parabuchneri [JQBJ]
168898
168981
+
Leu
TAG
[ENA]
¡û
>W1610528751
JQBN01000010
Bacillota
Fructilactobacillus fructivorans homohiochii [JQBN]
75050
74967
-
Leu
TAG
[ENA]
¡û
>W1610997959
LXIA01000018
Bacillota
Lentilactobacillus parabuchneri [LXIA]
170537
170620
+
Leu
TAG
[ENA]
¡û
>W1611008687
LXUG01000022
Bacillota
Lentilactobacillus parabuchneri [LXUG]
107926
107843
-
Leu
TAG
[ENA]
¡û
>W1611014522
LYDQ01000022
Bacillota
Lentilactobacillus parabuchneri [LYDQ]
212979
213062
+
Leu
TAG
[ENA]
¡û
>W1710028209
AYYQ01000029
Bacillota
Apilactobacillus ozensis DSM 23829 = JCM 17196 [AYYQ]
40838
40921
+
Leu
TAG
[ENA]
¡û
>W1710028391
AYYV01000086
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [AYYV]
106678
106595
-
Leu
TAG
[ENA]
¡û
>W1710029315
AYZR01000009
Bacillota
Lentilactobacillus senioris DSM 24302 = JCM 17472 [AYZR]
93162
93079
-
Leu
TAG
[ENA]
¡û
>W1710031274
AZDM01000085
Bacillota
Lentilactobacillus buchneri DSM 20057 [AZDM]
210
127
-
Leu
TAG
[ENA]
¡û
>W1710031542
AZDS01000005
Bacillota
Fructilactobacillus fructivorans KCTC 3543 = DSM 20203 [AZDS]
86115
86032
-
Leu
TAG
[ENA]
¡û
>W1710031965
AZEA01000015
Bacillota
Lentilactobacillus sunkii DSM 19904 [AZEA]
12041
11958
-
Leu
TAG
[ENA]
¡û
>W1710031987
AZEB01000008
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [AZEB]
81455
81372
-
Leu
TAG
[ENA]
¡û
>W1710032079
AZED01000013
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [AZED]
107045
106962
-
Leu
TAG
[ENA]
¡û
>W1710032367
AZEI01000078
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [AZEI]
89149
89066
-
Leu
TAG
[ENA]
¡û
>W1710032555
AZEN01000421
Bacillota
Lentilactobacillus parakefiri DSM 10551 [AZEN]
8990
9073
+
Leu
TAG
[ENA]
¡û
>W1710033025
AZEY01000068
Bacillota
Lentilactobacillus diolivorans DSM 14421 [AZEY]
36510
36427
-
Leu
TAG
[ENA]
¡û
>W1710034353
AZFY01000119
Bacillota
Lentilactobacillus farraginis DSM 18382 = JCM 14108 [AZFY]
11450
11367
-
Leu
TAG
[ENA]
¡û
>W1710034394
AZFZ01000001
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [AZFZ]
103207
103124
-
Leu
TAG
[ENA]
¡û
>W1710034972
AZGK01000003
Bacillota
Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865 [AZGK]
168870
168953
+
Leu
TAG
[ENA]
¡û
>W1710041691
BBAR01000001
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [BBAR]
10794
10877
+
Leu
TAG
[ENA]
¡û
>W1710041814
BBAT01000002
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [BBAT]
206569
206652
+
Leu
TAG
[ENA]
¡û
>W1710041846
BBAU01000004
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [BBAU]
83491
83408
-
Leu
TAG
[ENA]
¡û
>W1710041901
BBAV01000006
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [BBAV]
79098
79015
-
Leu
TAG
[ENA]
¡û
>W1710041994
BBAX01000005
Bacillota
Apilactobacillus ozensis DSM 23829 = JCM 17196 [BBAX]
23556
23639
+
Leu
TAG
[ENA]
¡û
>W1710042611
BBBV01000007
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [BBBV]
76096
76013
-
Leu
TAG
[ENA]
¡û
>W1710070328
BCVT01000006
Bacillota
Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865 [BCVT]
306
223
-
Leu
TAG
[ENA]
¡û
>W1710081703
BDGB01000025
Bacillota
Lentilactobacillus parakefiri [BDGB]
1261
1344
+
Leu
TAG
[ENA]
¡û
>W1710629472
JQAS01000005
Bacillota
Fructilactobacillus fructivorans [JQAS]
104862
104945
+
Leu
TAG
[ENA]
¡û
>W1710630148
JQBI01000022
Bacillota
Fructilactobacillus fructivorans [JQBI]
2868
2785
-
Leu
TAG
[ENA]
¡û
>W1710630209
JQBJ01000173
Bacillota
Lentilactobacillus parabuchneri [JQBJ]
168898
168981
+
Leu
TAG
[ENA]
¡û
>W1710630341
JQBN01000010
Bacillota
Fructilactobacillus fructivorans homohiochii [JQBN]
75050
74967
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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