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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96147 (13 seq.)
>WENV180179618
OAWJ01003516
[OAWJ] human gut metagenome; faeces
1187
1274
+
Trp
CCA
[ENA]
¡û
>WENV180289881
OBIU01000357
[OBIU] human gut metagenome; human gut
2972
3059
+
Trp
CCA
[ENA]
¡û
>WENV180995961
ODVR01042123
[ODVR] human metagenome; G_DNA_Stool
320
407
+
Trp
CCA
[ENA]
¡û
>WENV181347784
OFMM01032191
[OFMM] human gut metagenome; human gut
485
400
-
Trp
CCA
[ENA]
¡û
>WENV181736936
OGQH01003382
[OGQH] human gut metagenome; faeces
7821
7736
-
Trp
CCA
[ENA]
¡û
>WENV181968556
OGZW01003343
[OGZW] human gut metagenome; faeces
10870
10783
-
Trp
CCA
[ENA]
¡û
>WENV182069110
OHFG01021032
[OHFG] human gut metagenome; feces
1101
1014
-
Trp
CCA
[ENA]
¡û
>WENV183232922
OLQV01000089
[OLQV] human gut metagenome; faeces
83793
83706
-
Trp
CCA
[ENA]
¡û
>WENV183265212
OLRS01002908
[OLRS] human gut metagenome; faeces
4117
4202
+
Trp
CCA
[ENA]
¡û
>WENV183375970
OLYA01046092
[OLYA] human gut metagenome; feces
495
408
-
Trp
CCA
[ENA]
¡û
>WENV183427299
OMBM01026945
[OMBM] human gut metagenome; feces
135
48
-
Trp
CCA
[ENA]
¡û
>WENV183446413
OMCQ01028610
[OMCQ] human gut metagenome; feces
29
116
+
Trp
CCA
[ENA]
¡û
>WENV183476096
OMEW01012835
[OMEW] human gut metagenome; feces
1560
1473
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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