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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96153 (41 seq.)
>W1710889293
LNAL01000003
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
543620
543704
+
Leu
CAG
[ENA]
¡û
>W131180755
ARNJ01000052
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
58397
58481
+
Leu
CAG
[ENA]
¡û
>W131215973
ATVL01000007
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
595305
595389
+
Leu
CAG
[ENA]
¡û
>W1711377560
MDZA01000266
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
39545
39463
-
Leu
CAG
[ENA]
¡û
>W1711377615
MDZB01000164
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
14939
15021
+
Leu
CAG
[ENA]
¡û
>W1711377644
MDZC01000068
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
140776
140858
+
Leu
CAG
[ENA]
¡û
>W1711726880
MTSE01000010
Bacteroidota
Hymenobacter crusticola MIMBbqt21 [MTSE]
132112
132030
-
Leu
CAG
[ENA]
¡û
>W1711767879
MVBC01000006
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
122767
122851
+
Leu
CAG
[ENA]
¡û
>W1712105576
NIRR01000014
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
58292
58210
-
Leu
CAG
[ENA]
¡û
>WENV181304879
OFID01005450
[OFID] marine metagenome; sea ice
160
242
+
Leu
CAG
[ENA]
¢þ
>WENV170988869
MWVY01020963
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
213
297
+
Leu
CAG
[ENA]
¢þ
>C181175095
CP029145
Bacteroidota
Hymenobacter nivis NBRC 111535 [CP029145]
4776382
4776464
+
Leu
CAG
-
¡û
>C191087884
CP032317
Bacteroidota
Hymenobacter oligotrophus sh-6 [CP032317]
1947205
1947123
-
Leu
CAG
-
¡û
>C191154891
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
3537580
3537498
-
Leu
CAG
-
¡û
>C191183821
CP040896
Bacteroidota
Hymenobacter jejuensis 17J68-5 [CP040896]
831593
831509
-
Leu
CAG
-
¡û
>W141734730
JNLX01000181
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
2152
2234
+
Leu
CAG
[ENA]
¡û
>W1910547407
FZNS01000005
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
452081
452163
+
Leu
CAG
[ENA]
¡û
>W1910651897
LYMU01000088
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
54463
54545
+
Leu
CAG
[ENA]
¡û
>W1911788173
QYCN01000086
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
716
634
-
Leu
CAG
[ENA]
¡û
>W1810089871
PGFA01000001
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
750764
750848
+
Leu
CAG
[ENA]
¡û
>W1810625901
QHKM01000004
Bacteroidota
Hymenobacter edaphi NL [QHKM]
354989
355071
+
Leu
CAG
[ENA]
¡û
>W1810678982
QKNS01000007
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
279206
279124
-
Leu
CAG
[ENA]
¡û
>W1810912383
QVLT01000014
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
56497
56579
+
Leu
CAG
[ENA]
¡û
>SRA1015217
SRR023845.502732
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
154
236
+
Leu
CAG
[SRA]
>C151009438
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
729521
729437
-
Leu
CAG
[Ensembl]
¡û
>C151017352
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
1101982
1102066
+
Leu
CAG
[Ensembl]
¡û
>C151063983
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
1496577
1496661
+
Leu
CAG
[Ensembl]
¡û
>C151096220
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
2292333
2292249
-
Leu
CAG
-
¡û
>W1511543327
JZIR01000092
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
17243
17159
-
Leu
CAG
[ENA]
¡û
>W1511582926
LATM01000001
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
1009201
1009119
-
Leu
CAG
[ENA]
¡û
>C161061567
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
4037279
4037197
-
Leu
CAG
[Ensembl]
¡û
>C161070715
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
1180111
1180193
+
Leu
CAG
[Ensembl]
¡û
>C161077138
CP014771
Bacteroidota
Hymenobacter sp. PAMC 26554 [CP014771]
1379410
1379328
-
Leu
CAG
[Ensembl]
¡û
>W1610749671
LNAL01000003
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
543620
543704
+
Leu
CAG
[ENA]
¡û
>W1710530561
FNOV01000005
Bacteroidota
Hymenobacter psychrophilus [FNOV]
180909
180825
-
Leu
CAG
[ENA]
¡û
>W1710553587
FOHS01000003
Bacteroidota
Hymenobacter actinosclerus [FOHS]
117550
117466
-
Leu
CAG
[ENA]
¡û
>W1710573726
FOXS01000001
Bacteroidota
Hymenobacter arizonensis [FOXS]
1412413
1412331
-
Leu
CAG
[ENA]
¡û
>W1710587485
FQYN01000010
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
53286
53372
+
Leu
CAG
[ENA]
¡û
>W1710590116
FRAS01000015
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
55257
55341
+
Leu
CAG
[ENA]
¡û
>W1710605407
FWWW01000055
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
51641
51725
+
Leu
CAG
[ENA]
¡û
>W1710610155
FYEW01000001
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
2167430
2167348
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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