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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96157 (55 seq.)
>W1711434412
MIMZ01000009
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
563
647
+
Tyr
GTA
[ENA]
¡û
>W1711434429
MIMZ01000017
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
285746
285662
-
Tyr
GTA
[ENA]
¡û
>W1711434439
MIMZ01000025
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
147830
147746
-
Tyr
GTA
[ENA]
¡û
>C171101766
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
1369761
1369845
+
Tyr
GTA
-
¡û
>C171101798
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2678086
2678170
+
Tyr
GTA
-
¡û
>C171101810
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
3087395
3087479
+
Tyr
GTA
-
¡û
>WENV180149244
OAUK01037293
[OAUK] human gut metagenome; faeces
204
288
+
Tyr
GTA
[ENA]
¢þ
>WENV180176427
OAWD01000106
[OAWD] human gut metagenome; faeces
385
469
+
Tyr
GTA
[ENA]
¢þ
>WENV180176513
OAWD01000202
[OAWD] human gut metagenome; faeces
17950
17866
-
Tyr
GTA
[ENA]
¢þ
>WENV180498517
OCAG01000333
[OCAG] human gut metagenome; faeces
2488
2404
-
Tyr
GTA
[ENA]
¢þ
>WENV180498681
OCAG01000876
[OCAG] human gut metagenome; faeces
12634
12550
-
Tyr
GTA
[ENA]
¢þ
>WENV180504490
OCAN01003957
[OCAN] human gut metagenome; faeces
1937
2021
+
Tyr
GTA
[ENA]
¢þ
>WENV180504708
OCAN01037499
[OCAN] human gut metagenome; faeces
185
269
+
Tyr
GTA
[ENA]
¢þ
>WENV180655321
OCVV010426192
[OCVV] gut metagenome; gut
91
7
-
Tyr
GTA
[ENA]
¢þ
>WENV180655324
OCVV010426192
[OCVV] gut metagenome; gut
91
7
-
Tyr
GTA
[ENA]
¢þ
>WENV181346259
OFML01008483
[OFML] human gut metagenome; human gut
892
976
+
Tyr
GTA
[ENA]
¢þ
>WENV182403186
OIET01001236
[OIET] human gut metagenome; human gut
12730
12646
-
Tyr
GTA
[ENA]
¢þ
>WENV182403225
OIET01001553
[OIET] human gut metagenome; human gut
2476
2392
-
Tyr
GTA
[ENA]
¢þ
>WENV182405362
OIEV01003504
[OIEV] human gut metagenome; human gut
562
646
+
Tyr
GTA
[ENA]
¢þ
>WENV182405499
OIEV01006791
[OIEV] human gut metagenome; human gut
1555
1639
+
Tyr
GTA
[ENA]
¢þ
>WENV182892238
OKSH01042399
[OKSH] human gut metagenome; faeces
496
412
-
Tyr
GTA
[ENA]
¢þ
>C191064423
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3802696
3802780
+
Tyr
GTA
-
¡û
>C191064426
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3803135
3803219
+
Tyr
GTA
-
¡û
>C191064440
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
2172785
2172701
-
Tyr
GTA
-
¡û
>C191219499
LR215983
Bacillota
Eubacterium limosum [LR215983]
294056
294140
+
Tyr
GTA
-
¡û
>C191219508
LR215983
Bacillota
Eubacterium limosum [LR215983]
733998
734082
+
Tyr
GTA
-
¡û
>C191219523
LR215983
Bacillota
Eubacterium limosum [LR215983]
3494527
3494443
-
Tyr
GTA
-
¡û
>W1810609754
QGUD01000004
Bacillota
Eubacterium limosum 8486cho [QGUD]
393601
393517
-
Tyr
GTA
[ENA]
¡û
>W1810609757
QGUD01000006
Bacillota
Eubacterium limosum 8486cho [QGUD]
30513
30429
-
Tyr
GTA
[ENA]
¡û
>W1810609769
QGUD01000016
Bacillota
Eubacterium limosum 8486cho [QGUD]
80585
80501
-
Tyr
GTA
[ENA]
¡û
>W1810871702
QUDF01000001
Bacillota
Eubacterium sp. AM05-23 [QUDF]
362998
363082
+
Tyr
GTA
[ENA]
¡û
>W1810871705
QUDF01000002
Bacillota
Eubacterium sp. AM05-23 [QUDF]
96
180
+
Tyr
GTA
[ENA]
¡û
>W1810871708
QUDF01000002
Bacillota
Eubacterium sp. AM05-23 [QUDF]
535
619
+
Tyr
GTA
[ENA]
¡û
>C11108817
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
949484
949568
+
Tyr
GTA
[Ensembl]
¡û
>C11108827
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
3726237
3726153
-
Tyr
GTA
[Ensembl]
¡û
>C11108849
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
2688941
2688857
-
Tyr
GTA
[Ensembl]
¡û
>W1511480153
JWIS01000009
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
124854
124938
+
Tyr
GTA
[ENA]
¡û
>W1511480173
JWIS01000016
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
80536
80452
-
Tyr
GTA
[ENA]
¡û
>W1511480184
JWIS01000020
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
93244
93160
-
Tyr
GTA
[ENA]
¡û
>W11144125
AEQN01000006
Bacillota
Pseudoramibacter alactolyticus ATCC 23263 [AEQN]
396
480
+
Tyr
GTA
[ENA]
¡û
>W11144147
AEQN01000016
Bacillota
Pseudoramibacter alactolyticus ATCC 23263 [AEQN]
367147
367063
-
Tyr
GTA
[ENA]
¡û
>C161037776
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
595101
595185
+
Tyr
GTA
[Ensembl]
¡û
>C161037810
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3248140
3248056
-
Tyr
GTA
[Ensembl]
¡û
>C161037813
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3247701
3247617
-
Tyr
GTA
[Ensembl]
¡û
>W1710525045
FNJF01000018
Bacillota
Eubacterium maltosivorans limosum [FNJF]
4995
4911
-
Tyr
GTA
[ENA]
¡û
>W1710525064
FNJF01000058
Bacillota
Eubacterium maltosivorans limosum [FNJF]
5039
4955
-
Tyr
GTA
[ENA]
¡û
>W1710530531
FNOU01000032
Bacillota
Eubacterium barkeri [FNOU]
18603
18687
+
Tyr
GTA
[ENA]
¡û
>W1710533807
FNRK01000014
Bacillota
Eubacterium aggregans [FNRK]
63543
63459
-
Tyr
GTA
[ENA]
¡û
>W1710533832
FNRK01000065
Bacillota
Eubacterium aggregans [FNRK]
275
191
-
Tyr
GTA
[ENA]
¡û
>W1710571976
FOWI01000006
Bacillota
Eubacterium callanderi [FOWI]
891
975
+
Tyr
GTA
[ENA]
¡û
>W1710571988
FOWI01000008
Bacillota
Eubacterium callanderi [FOWI]
891
975
+
Tyr
GTA
[ENA]
¡û
>W1710571998
FOWI01000010
Bacillota
Eubacterium callanderi [FOWI]
2479
2395
-
Tyr
GTA
[ENA]
¡û
>W1710591284
FRBP01000004
Bacillota
Eubacterium callanderi [FRBP]
566
650
+
Tyr
GTA
[ENA]
¡û
>W1710591309
FRBP01000012
Bacillota
Eubacterium callanderi [FRBP]
172779
172695
-
Tyr
GTA
[ENA]
¡û
>W1710591314
FRBP01000017
Bacillota
Eubacterium callanderi [FRBP]
123566
123650
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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