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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96158 (5 seq.)
>WENV180291839
OBIV01195350
[OBIV] soil metagenome; Clay
3
88
+
Tyr
GTA
[ENA]
¡û
>WENV180311856
OBJT01627254
[OBJT] soil metagenome; soil
85
170
+
Tyr
GTA
[ENA]
¡û
>WENV180344277
OBLK01310975
[OBLK] soil metagenome; Clay
128
43
-
Tyr
GTA
[ENA]
¡û
>WENV077719
AAFX01093691
Soil microbial communities from Minnesota Farm
298
385
+
Tyr
GTA
[ENA]
>WENV077848
AAFX01114081
Soil microbial communities from Minnesota Farm
211
298
+
Tyr
GTA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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