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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96177 (55 seq.)
>W1711117578
LUDG01000004
Bacteroidota
Riemerella anatipestifer [LUDG]
10089
10171
+
Leu
CAA
[ENA]
¡û
>W1711117617
LUDH01000004
Bacteroidota
Riemerella anatipestifer [LUDH]
192582
192500
-
Leu
CAA
[ENA]
¡û
>W1711117634
LUDI01000001
Bacteroidota
Riemerella anatipestifer [LUDI]
48887
48805
-
Leu
CAA
[ENA]
¡û
>W1711117683
LUDJ01000005
Bacteroidota
Riemerella anatipestifer [LUDJ]
197312
197230
-
Leu
CAA
[ENA]
¡û
>W1711117725
LUDK01000004
Bacteroidota
Riemerella anatipestifer [LUDK]
192583
192501
-
Leu
CAA
[ENA]
¡û
>W1711117760
LUDL01000005
Bacteroidota
Riemerella anatipestifer [LUDL]
10090
10172
+
Leu
CAA
[ENA]
¡û
>W1711117802
LUDM01000004
Bacteroidota
Riemerella anatipestifer [LUDM]
10089
10171
+
Leu
CAA
[ENA]
¡û
>W1711117838
LUDN01000004
Bacteroidota
Riemerella anatipestifer [LUDN]
10089
10171
+
Leu
CAA
[ENA]
¡û
>W1711117879
LUDO01000004
Bacteroidota
Riemerella anatipestifer [LUDO]
192583
192501
-
Leu
CAA
[ENA]
¡û
>W1711117919
LUDP01000016
Bacteroidota
Riemerella anatipestifer [LUDP]
10089
10171
+
Leu
CAA
[ENA]
¡û
>W1711117951
LUDQ01000004
Bacteroidota
Riemerella anatipestifer [LUDQ]
192582
192500
-
Leu
CAA
[ENA]
¡û
>W1711117966
LUDR01000005
Bacteroidota
Riemerella anatipestifer [LUDR]
121990
122074
+
Leu
CAA
[ENA]
¡û
>W1711118016
LUDS01000004
Bacteroidota
Riemerella anatipestifer [LUDS]
10089
10171
+
Leu
CAA
[ENA]
¡û
>W1711118041
LUDT01000014
Bacteroidota
Riemerella anatipestifer [LUDT]
34610
34528
-
Leu
CAA
[ENA]
¡û
>W1711118095
LUDU01000004
Bacteroidota
Riemerella anatipestifer [LUDU]
192560
192478
-
Leu
CAA
[ENA]
¡û
>W1711118128
LUDV01000003
Bacteroidota
Riemerella anatipestifer [LUDV]
10090
10172
+
Leu
CAA
[ENA]
¡û
>W1711385052
MEDR01000032
Bacteroidota
Chryseobacterium sp. SCN 40-13 [MEDR]
40720
40804
+
Leu
CAA
[ENA]
¡û
>C171015063
CP011859
Bacteroidota
Riemerella anatipestifer HXb2 [CP011859]
1692722
1692640
-
Leu
CAA
-
¡û
>W131059218
ANGF01000018
Bacteroidota
Riemerella anatipestifer RA-SG [ANGF]
210231
210149
-
Leu
CAA
[ENA]
¡û
>WENV170298360
CESF01101596
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1386
1304
-
Leu
CAA
[ENA]
¢þ
>C181226360
LT906475
Bacteroidota
Riemerella anatipestifer NCTC11014 [LT906475]
1892843
1892761
-
Leu
CAA
-
¡û
>C191065577
CP029760
Bacteroidota
Riemerella anatipestifer RCAD0133 [CP029760]
414935
415017
+
Leu
CAA
-
¡û
>C191185725
CP041029
Bacteroidota
Riemerella anatipestifer WJ4 [CP041029]
1996502
1996420
-
Leu
CAA
-
¡û
>W1911615646
PPEC01000003
Bacteroidota
Riemerella anatipestifer RA1 [PPEC]
209756
209674
-
Leu
CAA
[ENA]
¡û
>W1810191548
PKKR01000003
Bacteroidota
Riemerella anatipestifer 17CS0503 [PKKR]
95865
95947
+
Leu
CAA
[ENA]
¡û
>W1810583140
QEWX01000131
Bacteroidota
Riemerella anatipestifer RA2 [QEWX]
37104
37022
-
Leu
CAA
[ENA]
¡û
>W1810758135
QPIE01000001
Bacteroidota
Chryseobacterium lacus YLOS41 [QPIE]
173230
173312
+
Leu
CAA
[ENA]
¡û
>C151010263
CP006649
Bacteroidota
Riemerella anatipestifer CH3 [CP006649]
574160
574244
+
Leu
CAA
[Ensembl]
¡û
>C151018465
CP007204
Bacteroidota
Riemerella anatipestifer Yb2 [CP007204]
1908957
1908875
-
Leu
CAA
-
¡û
>C151025739
CP007503
Bacteroidota
Riemerella anatipestifer 17 [CP007503]
1883780
1883698
-
Leu
CAA
[Ensembl]
¡û
>C151025779
CP007504
Bacteroidota
Riemerella anatipestifer 153 [CP007504]
1929970
1929888
-
Leu
CAA
[Ensembl]
¡û
>C11118452
CP002346
Bacteroidota
Riemerella anatipestifer ATCC 11845 = DSM 15868 [CP002346]
1891304
1891222
-
Leu
CAA
[Ensembl]
¡û
>C11118475
CP002562
Bacteroidota
Riemerella anatipestifer RA-GD [CP002562]
427919
428001
+
Leu
CAA
[Ensembl]
¡û
>W11141058
AENH01000026
Bacteroidota
Riemerella anatipestifer RA-YM [AENH]
10022
10104
+
Leu
CAA
[ENA]
¡û
>W1511584110
LAVB01000002
Bacteroidota
Riemerella anatipestifer RA-JLLY [LAVB]
215053
214971
-
Leu
CAA
[ENA]
¡û
>C121012030
CP003388
Bacteroidota
Riemerella anatipestifer ATCC 11845 = DSM 15868 [CP003388]
2051231
2051149
-
Leu
CAA
-
¡û
>C131006660
CP003787
Bacteroidota
Riemerella anatipestifer RA-CH-1 [CP003787]
149968
150052
+
Leu
CAA
[Ensembl]
¡û
>C131011624
CP004020
Bacteroidota
Riemerella anatipestifer RA-CH-2 [CP004020]
1965411
1965493
+
Leu
CAA
[Ensembl]
¡û
>W1610928937
LUDG01000004
Bacteroidota
Riemerella anatipestifer [LUDG]
10089
10171
+
Leu
CAA
[ENA]
¡û
>W1610928976
LUDH01000004
Bacteroidota
Riemerella anatipestifer [LUDH]
192582
192500
-
Leu
CAA
[ENA]
¡û
>W1610928993
LUDI01000001
Bacteroidota
Riemerella anatipestifer [LUDI]
48887
48805
-
Leu
CAA
[ENA]
¡û
>W1610929042
LUDJ01000005
Bacteroidota
Riemerella anatipestifer [LUDJ]
197312
197230
-
Leu
CAA
[ENA]
¡û
>W1610929084
LUDK01000004
Bacteroidota
Riemerella anatipestifer [LUDK]
192583
192501
-
Leu
CAA
[ENA]
¡û
>W1610929119
LUDL01000005
Bacteroidota
Riemerella anatipestifer [LUDL]
10090
10172
+
Leu
CAA
[ENA]
¡û
>W1610929161
LUDM01000004
Bacteroidota
Riemerella anatipestifer [LUDM]
10089
10171
+
Leu
CAA
[ENA]
¡û
>W1610929197
LUDN01000004
Bacteroidota
Riemerella anatipestifer [LUDN]
10089
10171
+
Leu
CAA
[ENA]
¡û
>W1610929238
LUDO01000004
Bacteroidota
Riemerella anatipestifer [LUDO]
192583
192501
-
Leu
CAA
[ENA]
¡û
>W1610929278
LUDP01000016
Bacteroidota
Riemerella anatipestifer [LUDP]
10089
10171
+
Leu
CAA
[ENA]
¡û
>W1610929310
LUDQ01000004
Bacteroidota
Riemerella anatipestifer [LUDQ]
192582
192500
-
Leu
CAA
[ENA]
¡û
>W1610929325
LUDR01000005
Bacteroidota
Riemerella anatipestifer [LUDR]
121990
122074
+
Leu
CAA
[ENA]
¡û
>W1610929375
LUDS01000004
Bacteroidota
Riemerella anatipestifer [LUDS]
10089
10171
+
Leu
CAA
[ENA]
¡û
>W1610929400
LUDT01000014
Bacteroidota
Riemerella anatipestifer [LUDT]
34610
34528
-
Leu
CAA
[ENA]
¡û
>W1610929454
LUDU01000004
Bacteroidota
Riemerella anatipestifer [LUDU]
192560
192478
-
Leu
CAA
[ENA]
¡û
>W1610929487
LUDV01000003
Bacteroidota
Riemerella anatipestifer [LUDV]
10090
10172
+
Leu
CAA
[ENA]
¡û
>W1710514139
FNAS01000001
Bacteroidota
Riemerella columbipharyngis [FNAS]
331097
331181
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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