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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96202 (51 seq.)
>W1710872790
LMMG01000034
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
20155
20071
-
Leu
TAG
[ENA]
¡û
>W1710873190
LMMP01000023
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
289777
289693
-
Leu
TAG
[ENA]
¡û
>W1711179428
LWHQ01000026
Alphaproteobacteria
Methylobacterium platani [LWHQ]
8049
7965
-
Leu
TAG
[ENA]
¡û
>W1711262674
LYXZ01000056
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
254785
254869
+
Leu
TAG
[ENA]
¡û
>W131163803
ARAA01000077
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
127428
127344
-
Leu
TAG
[ENA]
¡û
>W131166447
ARCM01000001
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
59194
59110
-
Leu
TAG
[ENA]
¡û
>W131166758
ARCS01000002
Alphaproteobacteria
Methylobacterium sp. 77 [ARCS]
1893999
1894083
+
Leu
TAG
[ENA]
¡û
>W131175667
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
742295
742379
+
Leu
TAG
[ENA]
¡û
>w026486
ABAY01000162
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
9057
9143
+
Leu
TAG
[ENA]
¡û
>w001301
AAAF01000014
Alphaproteobacteria
Rhodopseudomonas palustris [AAAF]
163632
163716
+
Leu
TAG
[ENA]
¡û
>WENV180690974
OCZS010042933
[OCZS] soil metagenome; soil
183
267
+
Leu
TAG
[ENA]
¢þ
>WENV180691429
OCZS010121983
[OCZS] soil metagenome; soil
788
704
-
Leu
TAG
[ENA]
¢þ
>W08006143
ABIP01000010
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
105509
105428
-
Leu
TAG
[ENA]
¡û
>C08006443
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
7239061
7239145
+
Leu
TAG
[Ensembl]
¡û
>WENV170577898
FSSH01002526
[FSSH] freshwater metagenome; drinking water
3204
3120
-
Leu
TAG
[ENA]
¢þ
>WENV170709230
LNFM01000206
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
263780
263696
-
Leu
TAG
[ENA]
¢þ
>WENV170710059
LNFM01001101
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
95080
95164
+
Leu
TAG
[ENA]
¢þ
>WENV170838353
MDSZ01166336
[MDSZ] marine metagenome; seawater
2690
2606
-
Leu
TAG
[ENA]
¢þ
>WENV170984401
MWVV01269239
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
238
154
-
Leu
TAG
[ENA]
¢þ
>W141485435
JFZJ01000065
Alphaproteobacteria
Rhodomicrobium udaipurense JA643 [JFZJ]
7147
7063
-
Leu
TAG
[ENA]
¡û
>C181041874
CP019966
Alphaproteobacteria
Rhodopseudomonas palustris PS3 [CP019966]
3271689
3271605
-
Leu
TAG
-
¡û
>C181180167
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
31306
31222
-
Leu
TAG
-
¡û
>C181180203
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
4825994
4826078
+
Leu
TAG
-
¡û
>W141821059
JQNH01000001
Alphaproteobacteria
Rhizobiales bacterium YIM 77505 [JQNH]
1296615
1296699
+
Leu
TAG
[ENA]
¡û
>C09107853
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
7488552
7488636
+
Leu
TAG
[Ensembl]
¡û
>W1810325517
PUEJ01000010
Alphaproteobacteria
Labrys okinawensis RP1T [PUEJ]
152191
152107
-
Leu
TAG
[ENA]
¡û
>W1511400887
JTHF01000068
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
72257
72341
+
Leu
TAG
[ENA]
¡û
>W1511400961
JTHG01000167
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
7500
7416
-
Leu
TAG
[ENA]
¡û
>W1511507859
JXOD01000022
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
40695
40779
+
Leu
TAG
[ENA]
¡û
>W1511563243
LABX01000109
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
2796
2880
+
Leu
TAG
[ENA]
¡û
>W1511563310
LABY01000113
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
7784
7700
-
Leu
TAG
[ENA]
¡û
>W1511563357
LABZ01000069
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
67298
67382
+
Leu
TAG
[ENA]
¡û
>W1511625945
LCZM01000190
Alphaproteobacteria
Rhodopseudomonas palustris 42OL [LCZM]
12408
12324
-
Leu
TAG
[ENA]
¡û
>C161001121
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
376652
376736
+
Leu
TAG
[Ensembl]
¡û
>W1610047397
BBDG01000156
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
78
162
+
Leu
TAG
[ENA]
¡û
>W1610590437
LDRL01000113
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
20026
20110
+
Leu
TAG
[ENA]
¡û
>W1610590515
LDRM01000131
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
7825
7741
-
Leu
TAG
[ENA]
¡û
>W1610590539
LDRN01000001
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
72468
72552
+
Leu
TAG
[ENA]
¡û
>W1610735136
LMMG01000034
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
20155
20071
-
Leu
TAG
[ENA]
¡û
>W1610735536
LMMP01000023
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
289777
289693
-
Leu
TAG
[ENA]
¡û
>W1610752968
LNEA01000071
Alphaproteobacteria
Rhizobiales bacterium Ga0077530 [LNEA]
1118
1202
+
Leu
TAG
[ENA]
¡û
>W1610987329
LWHQ01000026
Alphaproteobacteria
Methylobacterium platani [LWHQ]
8049
7965
-
Leu
TAG
[ENA]
¡û
>W1611024541
LYXZ01000056
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
254785
254869
+
Leu
TAG
[ENA]
¡û
>W1710044002
BBDG01000156
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
78
162
+
Leu
TAG
[ENA]
¡û
>W1710540673
FNWZ01000003
Alphaproteobacteria
Tardiphaga sp. OK245 [FNWZ]
856505
856421
-
Leu
TAG
[ENA]
¡û
>W1710548819
FOEB01000008
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
281411
281495
+
Leu
TAG
[ENA]
¡û
>W1710560653
FONO01000003
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
313795
313879
+
Leu
TAG
[ENA]
¡û
>W1710579073
FPCB01000039
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
7589
7505
-
Leu
TAG
[ENA]
¡û
>W1710709717
LDRL01000113
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
20026
20110
+
Leu
TAG
[ENA]
¡û
>W1710709795
LDRM01000131
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
7825
7741
-
Leu
TAG
[ENA]
¡û
>W1710709819
LDRN01000001
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
72468
72552
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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