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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96222 (76 seq.)
>W1710863528
LMFE01000011
Actinomycetota
Nocardia sp. Root136 [LMFE]
340932
340847
-
Leu
CAG
[ENA]
¡û
>W1711613637
MOYO01000001
Actinomycetota
Nocardia seriolae [MOYO]
7708862
7708945
+
Leu
CAG
[ENA]
¡û
>W1711767546
MVAC01000002
Actinomycetota
Nocardia seriolae [MVAC]
72594
72677
+
Leu
CAG
[ENA]
¡û
>WENV180247927
OBEQ010069105
[OBEQ] groundwater metagenome; groundwater
288
371
+
Leu
CAG
[ENA]
¡û
>WENV180370156
OBOH01035645
[OBOH] marine metagenome; ENVO:00002010
54
139
+
Leu
CAG
[ENA]
¡û
>WENV180384022
OBOW01000432
[OBOW] marine metagenome; seawater
185
100
-
Leu
CAG
[ENA]
¡û
>WENV180591223
OCOV01004172
[OCOV] marine metagenome; ENVO:01000301
451
536
+
Leu
CAG
[ENA]
¡û
>WENV170472971
CEVG01336283
[CEVG] marine metagenome genome assembly TARA_140_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
182
97
-
Leu
CAG
[ENA]
¡û
>WENV170854669
MDTA01192789
[MDTA] marine metagenome; seawater
9488
9403
-
Leu
CAG
[ENA]
¡û
>WENV170929200
MDTG01146461
[MDTG] marine metagenome; seawater
97
12
-
Leu
CAG
[ENA]
¡û
>C181003417
AP017900
Actinomycetota
Nocardia seriolae UTF1 [AP017900]
34419
34502
+
Leu
CAG
-
¡û
>W141769063
JOFP01000002
Actinomycetota
Pilimelia anulata [JOFP]
1694432
1694517
+
Leu
CAG
[ENA]
¡û
>W1911422470
NXEH01000005
Actinomycetota
Nocardia farcinica CNM20080921 [NXEH]
126483
126400
-
Leu
CAG
[ENA]
¡û
>W1911573011
PDDW01000001
Actinomycetota
Nocardia sp. FDAARGOS_372 [PDDW]
4762994
4763077
+
Leu
CAG
[ENA]
¡û
>SRA1005143
SRR006907.59069
metagenomic water samples (SRP000427)
103
186
+
Leu
CAG
[SRA]
>W1810608603
QGTL01000004
Actinomycetota
Nocardia neocaledoniensis DSM 44717 [QGTL]
472986
473069
+
Leu
CAG
[ENA]
¡û
>C151083119
CP011489
Actinomycetota
Actinobacteria bacterium IMCC26256 [CP011489]
47058
47143
+
Leu
CAG
[Ensembl]
¡û
>W2010579723
JAAXOM010000002
Actinomycetota
Nocardia coubleae DSM 44960 [JAAXOM]
50627
50544
-
Leu
CAG
[ENA]
¡û
>W2010591800
JABELX010000012
Actinomycetota
Nocardia uniformis JCM 3224 [JABELX]
127668
127753
+
Leu
CAG
[ENA]
¡û
>W2010663466
JACBIU010000011
Actinomycetota
Nocardia sp. GTS18 [JACBIU]
52797
52714
-
Leu
CAG
[ENA]
¡û
>W2010685312
JACETW010000026
Actinomycetota
Nocardia farcinica JNQH325 [JACETW]
52407
52490
+
Leu
CAG
[ENA]
¡û
>W2011142828
NXEH01000005
Actinomycetota
Nocardia farcinica CNM20080921 [NXEH]
126483
126400
-
Leu
CAG
[ENA]
¡û
>W2011838861
UGVK01000001
Actinomycetota
Rhodococcus rhodochrous NCTC630 [UGVK]
5286378
5286295
-
Leu
CAG
[ENA]
¡û
>W2012379316
WMKC01000028
Actinomycetota
Nocardia seriolae PY_31 [WMKC]
10550
10633
+
Leu
CAG
[ENA]
¡û
>W2110269313
JACVEM010000003
Actinomycetota
Nocardia farcinica JNQH326 [JACVEM]
165940
166023
+
Leu
CAG
[ENA]
¡û
>W2110332383
JADLPC010000023
Actinomycetota
Nocardia farcinica BJ06-0055 [JADLPC]
38106
38189
+
Leu
CAG
[ENA]
¡û
>W2110332689
JADLPJ010000004
Actinomycetota
Nocardia farcinica BJ06-0096 [JADLPJ]
38528
38611
+
Leu
CAG
[ENA]
¡û
>W2110332846
JADLPM010000005
Actinomycetota
Nocardia farcinica BJ06-0101 [JADLPM]
168011
167928
-
Leu
CAG
[ENA]
¡û
>W2110333412
JADLPX010000009
Actinomycetota
Nocardia farcinica BJ06-0126 [JADLPX]
181086
181003
-
Leu
CAG
[ENA]
¡û
>W2110333839
JADLQG010000004
Actinomycetota
Nocardia farcinica BJ06-0135 [JADLQG]
360749
360832
+
Leu
CAG
[ENA]
¡û
>W2110333994
JADLQJ010000011
Actinomycetota
Nocardia farcinica BJ06-0138 [JADLQJ]
37032
37115
+
Leu
CAG
[ENA]
¡û
>W2110334190
JADLQN010000003
Actinomycetota
Nocardia higoensis BJ06-0143 [JADLQN]
467079
467162
+
Leu
CAG
[ENA]
¡û
>W2110334480
JADLQT010000003
Actinomycetota
Nocardia farcinica BJ06-0151 [JADLQT]
638837
638920
+
Leu
CAG
[ENA]
¡û
>W2110334849
JADLRA010000005
Actinomycetota
Nocardia farcinica N-4 [JADLRA]
165911
165994
+
Leu
CAG
[ENA]
¡û
>W2110334920
JADLRC010000001
Actinomycetota
Nocardia farcinica N-9 [JADLRC]
659652
659735
+
Leu
CAG
[ENA]
¡û
>W2110335190
JADLRH010000004
Actinomycetota
Nocardia otitidiscaviarum N-15 [JADLRH]
349549
349634
+
Leu
CAG
[ENA]
¡û
>W2110335461
JADLRM010000002
Actinomycetota
Nocardia otitidiscaviarum N-22 [JADLRM]
222247
222332
+
Leu
CAG
[ENA]
¡û
>W2110335542
JADLRN010000012
Actinomycetota
Nocardia farcinica N-23 [JADLRN]
126079
125996
-
Leu
CAG
[ENA]
¡û
>W2110335641
JADLRP010000022
Actinomycetota
Nocardia farcinica N-25 [JADLRP]
67207
67124
-
Leu
CAG
[ENA]
¡û
>W2110506395
JAFJMN010000011
Actinomycetota
Hoyosella rhizosphaerae J12GA03 [JAFJMN]
74212
74129
-
Leu
CAG
[ENA]
¡û
>C211301779
CP072111
Actinomycetota
Corynebacterium sp. 1864 [CP072111]
276981
276898
-
Leu
CAG
-
¡û
>C211322628
CP073655
Actinomycetota
Nocardia seriolae TL20 [CP073655]
2507854
2507937
+
Leu
CAG
-
¡û
>C231230630
CP086599
Actinomycetota
Nocardia farcinica SZ 1509 [CP086599]
32117
32200
+
Leu
CAG
-
¡û
>C231248531
CP088007
Actinomycetota
Nocardia huaxiensis BCHNH01 [CP088007]
6152778
6152863
+
Leu
CAG
-
¡û
>C231258351
CP089214
Actinomycetota
Nocardia asteroides FDAARGOS_1620 [CP089214]
3949942
3950025
+
Leu
CAG
-
¡û
>C231258839
CP089226
Actinomycetota
Nocardia yamanashiensis FDAARGOS_1623 [CP089226]
6806270
6806187
-
Leu
CAG
-
¡û
>C231258901
CP089227
Actinomycetota
Nocardia asteroides FDAARGOS_1622 [CP089227]
6341372
6341287
-
Leu
CAG
-
¡û
>C241015003
AP028458
Actinomycetota
Nocardia seriolae KGN1266 [AP028458]
34519
34602
+
Leu
CAG
-
¡û
>C241015064
AP028459
Actinomycetota
Nocardia seriolae 024013 [AP028459]
34538
34621
+
Leu
CAG
-
¡û
>C241206707
CP108020
Actinomycetota
Nocardia salmonicida NBC_00321 [CP108020]
5607992
5608075
+
Leu
CAG
-
¡û
>C241218399
CP109596
Actinomycetota
Nocardia sp. NBC_01503 [CP109596]
2496106
2496023
-
Leu
CAG
-
¡û
>C241319988
CP134713
Actinomycetota
Nocardia seriolae SDAT 0011 [CP134713]
34424
34507
+
Leu
CAG
-
¡û
>W1511220624
JNCT01000002
Actinomycetota
Nocardia seriolae ZJ0503 [JNCT]
72577
72660
+
Leu
CAG
[ENA]
¡û
>W121125413
BAGA01000002
Actinomycetota
Nocardia higoensis NBRC 100133 [BAGA]
3001
3084
+
Leu
CAG
[ENA]
¡û
>W121125565
BAGC01000071
Actinomycetota
Nocardia niigatensis NBRC 100131 [BAGC]
351260
351345
+
Leu
CAG
[ENA]
¡û
>W1610078433
BDAW01000064
Actinomycetota
Nocardia acidivorans NBRC 108247 [BDAW]
49378
49461
+
Leu
CAG
[ENA]
¡û
>W1610078475
BDAX01000023
Actinomycetota
Nocardia alba NBRC 108234 [BDAX]
1913
1998
+
Leu
CAG
[ENA]
¡û
>W1610078961
BDBH01000002
Actinomycetota
Nocardia harenae NBRC 108248 [BDBH]
417111
417028
-
Leu
CAG
[ENA]
¡û
>W1610079039
BDBI01000031
Actinomycetota
Nocardia ignorata NBRC 108230 [BDBI]
84797
84880
+
Leu
CAG
[ENA]
¡û
>W1610079084
BDBJ01000106
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
3088
3171
+
Leu
CAG
[ENA]
¡û
>W1610080013
BDCB01000025
Actinomycetota
Nocardia salmonicida NBRC 100376 [BDCB]
40578
40493
-
Leu
CAG
[ENA]
¡û
>W1610597730
LFFH01000048
Actinomycetota
Actinobacteria bacterium casp-actino8 [LFFH]
10751
10836
+
Leu
CAG
[ENA]
¡û
>W1610597732
LFFI01000002
Actinomycetota
Actinobacteria bacterium casp-actino9 [LFFI]
27762
27677
-
Leu
CAG
[ENA]
¡û
>W1610597757
LFFI01000052
Actinomycetota
Actinobacteria bacterium casp-actino9 [LFFI]
22860
22775
-
Leu
CAG
[ENA]
¡û
>W1610597782
LFFI01000082
Actinomycetota
Actinobacteria bacterium casp-actino9 [LFFI]
49463
49548
+
Leu
CAG
[ENA]
¡û
>W1610725874
LMFE01000011
Actinomycetota
Nocardia sp. Root136 [LMFE]
340932
340847
-
Leu
CAG
[ENA]
¡û
>W1710076992
BDAW01000064
Actinomycetota
Nocardia acidivorans NBRC 108247 [BDAW]
49378
49461
+
Leu
CAG
[ENA]
¡û
>W1710077034
BDAX01000023
Actinomycetota
Nocardia alba NBRC 108234 [BDAX]
1913
1998
+
Leu
CAG
[ENA]
¡û
>W1710077520
BDBH01000002
Actinomycetota
Nocardia harenae NBRC 108248 [BDBH]
417111
417028
-
Leu
CAG
[ENA]
¡û
>W1710077598
BDBI01000031
Actinomycetota
Nocardia ignorata NBRC 108230 [BDBI]
84797
84880
+
Leu
CAG
[ENA]
¡û
>W1710077643
BDBJ01000106
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
3088
3171
+
Leu
CAG
[ENA]
¡û
>W1710078572
BDCB01000025
Actinomycetota
Nocardia salmonicida NBRC 100376 [BDCB]
40578
40493
-
Leu
CAG
[ENA]
¡û
>W1710718977
LFFH01000048
Actinomycetota
Actinobacteria bacterium casp-actino8 [LFFH]
10751
10836
+
Leu
CAG
[ENA]
¡û
>W1710718979
LFFI01000002
Actinomycetota
Actinobacteria bacterium casp-actino9 [LFFI]
27762
27677
-
Leu
CAG
[ENA]
¡û
>W1710719004
LFFI01000052
Actinomycetota
Actinobacteria bacterium casp-actino9 [LFFI]
22860
22775
-
Leu
CAG
[ENA]
¡û
>W1710719029
LFFI01000082
Actinomycetota
Actinobacteria bacterium casp-actino9 [LFFI]
49463
49548
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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