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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96337 (39 seq.)
>W131053715
ANAH01000054
Myxococcota
Cystobacter fuscus DSM 2262 [ANAH]
10132
10050
-
Leu
GAG
[ENA]
¡û
>W131086617
AOBT01000008
Myxococcota
Myxococcus xanthus DZF1 [AOBT]
1974
1892
-
Leu
GAG
[ENA]
¡û
>W1711625258
MPIN01000003
Myxococcota
Cystobacter ferrugineus [MPIN]
120034
119952
-
Leu
GAG
[ENA]
¡û
>W1711628643
MPOI01000011
Myxococcota
Archangium sp. Cb G35 [MPOI]
131719
131637
-
Leu
GAG
[ENA]
¡û
>C014483
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
3290739
3290820
+
Leu
GAG
[Ensembl]
¡û
>w012177
AAMD01000167
Myxococcota
Stigmatella aurantiaca DW4/3-1 [AAMD]
1328
1244
-
Leu
GAG
[ENA]
¡û
>WENV181184991
OEKZ01001000
[OEKZ] metagenome; 1998
85
3
-
Leu
GAG
[ENA]
¢þ
>WENV181193075
OEPS011415745
[OEPS] soil metagenome; soil
76
158
+
Leu
GAG
[ENA]
¢þ
>WENV170712729
LNFM01017013
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5555
5639
+
Leu
GAG
[ENA]
¢þ
>C181057842
CP022098
Myxococcota
Cystobacter fuscus DSM 52655 [CP022098]
4129069
4129151
+
Leu
GAG
-
¡û
>C181059857
CP022163
Myxococcota
Melittangium boletus DSM 14713 [CP022163]
417964
417882
-
Leu
GAG
-
¡û
>C181060625
CP022203
Myxococcota
Corallococcus macrosporus DSM 14697 [CP022203]
3294122
3294204
+
Leu
GAG
-
¡û
>C191013120
CP017169
Myxococcota
Myxococcus xanthus GH3.5.6c2 [CP017169]
3303085
3303167
+
Leu
GAG
-
¡û
>C191013185
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
3222234
3222316
+
Leu
GAG
-
¡û
>C191013251
CP017171
Myxococcota
Myxococcus xanthus KF3.2.8c11 [CP017171]
3078586
3078668
+
Leu
GAG
-
¡û
>C191013316
CP017172
Myxococcota
Myxococcus xanthus KF4.3.9c1 [CP017172]
3229646
3229728
+
Leu
GAG
-
¡û
>C191013381
CP017173
Myxococcota
Myxococcus xanthus MC3.3.5c16 [CP017173]
3258948
3259030
+
Leu
GAG
-
¡û
>C191013446
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
3258948
3259030
+
Leu
GAG
-
¡û
>C191128673
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
6309868
6309786
-
Leu
GAG
-
¡û
>W141695197
JMCB01000013
Myxococcota
Hyalangium minutum [JMCB]
408574
408656
+
Leu
GAG
[ENA]
¡û
>W141695236
JMCC01000026
Myxococcota
Enhygromyxa salina [JMCC]
128964
129046
+
Leu
GAG
[ENA]
¡û
>W141806623
JPMI01000020
Myxococcota
Archangium violaceum Cb vi76 [JPMI]
10133
10215
+
Leu
GAG
[ENA]
¡û
>W1911701588
QNUN01000001
Myxococcota
Corallococcus sp. H22C18031201 [QNUN]
22426
22344
-
Leu
GAG
[ENA]
¡û
>W1810452231
PZOX01000019
Myxococcota
Vitiosangium sp. GDMCC 1.1324 [PZOX]
132214
132296
+
Leu
GAG
[ENA]
¡û
>W1810884669
QUMU01000002
Myxococcota
Archangium gephyra DSM 2261 [QUMU]
360717
360635
-
Leu
GAG
[ENA]
¡û
>C151008170
CP006003
Myxococcota
Myxococcus fulvus 124B02 [CP006003]
4389482
4389563
+
Leu
GAG
[Ensembl]
¡û
>C151083584
CP011509
Myxococcota
Archangium gephyra DSM 2261 [CP011509]
8605810
8605728
-
Leu
GAG
[Ensembl]
¡û
>C151091039
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
5258740
5258658
-
Leu
GAG
[Ensembl]
¡û
>C11114313
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
5162502
5162584
+
Leu
GAG
[Ensembl]
¡û
>C11119134
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
6482346
6482264
-
Leu
GAG
[Ensembl]
¡û
>C121012073
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
6613016
6612934
-
Leu
GAG
[Ensembl]
¡û
>W121102852
AKXT01000010
Myxococcota
Myxococcus hansupus DSM 436 [AKXT]
194260
194342
+
Leu
GAG
[ENA]
¡û
>W121103119
AKYI01000783
Myxococcota
Myxococcus xanthus DZ2 [AKYI]
1495
1413
-
Leu
GAG
[ENA]
¡û
>C131011658
CP004025
Myxococcota
Myxococcus stipitatus DSM 14675 [CP004025]
4090710
4090792
+
Leu
GAG
[Ensembl]
¡û
>W1710513699
FNAJ01000003
Myxococcota
Myxococcus virescens [FNAJ]
6001
5919
-
Leu
GAG
[ENA]
¡û
>W1710529788
FNOH01000004
Myxococcota
Myxococcus xanthus [FNOH]
2179
2097
-
Leu
GAG
[ENA]
¡û
>W1710544127
FOAP01000024
Myxococcota
Stigmatella aurantiaca [FOAP]
34836
34918
+
Leu
GAG
[ENA]
¡û
>W1710553999
FOIB01000009
Myxococcota
Myxococcus fulvus [FOIB]
349637
349556
-
Leu
GAG
[ENA]
¡û
>W1710554375
FOIJ01000028
Myxococcota
Stigmatella erecta [FOIJ]
43905
43987
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK