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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96412 (53 seq.)
>WENV180288008
OBIL01032246
[OBIL] metagenome; hydrothermal vent
353
269
-
Tyr
GTA
[ENA]
¢þ
>WENV181215191
OFBZ01007462
[OFBZ] metagenome; hydrothermal vent
331
415
+
Tyr
GTA
[ENA]
¢þ
>WENV181215780
OFCA01015199
[OFCA] metagenome; hydrothermal vent
691
607
-
Tyr
GTA
[ENA]
¢þ
>WENV183719437
PDWJ01014112
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
8261
8345
+
Tyr
GTA
[ENA]
¢þ
>WENV170012435
ASRK01000026
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
144
60
-
Tyr
GTA
[ENA]
¢þ
>WENV170112444
CEGE01016856
[CEGE] microbial mat metagenome; grass silage
106
22
-
Tyr
GTA
[ENA]
¢þ
>WENV170635269
JDSF01000556
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
2812
2896
+
Tyr
GTA
[ENA]
¢þ
>WENV170635568
JDSG01000085
[JDSG] bioreactor metagenome; continuous culture bioreactor short generation time transfer1; day 52 after inoculation
17293
17377
+
Tyr
GTA
[ENA]
¢þ
>WENV170646376
JQGR01000371
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
932
848
-
Tyr
GTA
[ENA]
¢þ
>WENV170646384
JQGR01000603
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
638
554
-
Tyr
GTA
[ENA]
¢þ
>WENV170779315
LZQN01000359
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
1198
1282
+
Tyr
GTA
[ENA]
¢þ
>C181196986
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
2276263
2276179
-
Tyr
GTA
-
¡û
>C181197011
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1077981
1077897
-
Tyr
GTA
-
¡û
>C181197051
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
2333985
2333901
-
Tyr
GTA
-
¡û
>C181197074
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
1150669
1150585
-
Tyr
GTA
-
¡û
>C191084495
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
2311263
2311179
-
Tyr
GTA
-
¡û
>C191084508
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
1038009
1037925
-
Tyr
GTA
-
¡û
>C191084661
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
2389127
2389043
-
Tyr
GTA
-
¡û
>C191084676
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
1065158
1065074
-
Tyr
GTA
-
¡û
>C191186409
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
2492002
2491918
-
Tyr
GTA
-
¡û
>W1911413048
NWVW01000005
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
39773
39689
-
Tyr
GTA
[ENA]
¡û
>W1911413053
NWVW01000006
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
18722
18806
+
Tyr
GTA
[ENA]
¡û
>W1911413095
NWVX01000007
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
77543
77627
+
Tyr
GTA
[ENA]
¡û
>W1911413123
NWVX01000022
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
18805
18889
+
Tyr
GTA
[ENA]
¡û
>W1911419367
NXAO01000015
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
119937
119853
-
Tyr
GTA
[ENA]
¡û
>W1911419384
NXAO01000047
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
36946
37030
+
Tyr
GTA
[ENA]
¡û
>W1911424159
NXFY01000001
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
60239
60155
-
Tyr
GTA
[ENA]
¡û
>W1911424190
NXFY01000025
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
19014
18930
-
Tyr
GTA
[ENA]
¡û
>W1911426168
NXID01000003
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
117367
117451
+
Tyr
GTA
[ENA]
¡û
>W1911426179
NXID01000009
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
36030
35946
-
Tyr
GTA
[ENA]
¡û
>W1911426275
NXIF01000031
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
18648
18732
+
Tyr
GTA
[ENA]
¡û
>W1911426291
NXIF01000039
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
27398
27482
+
Tyr
GTA
[ENA]
¡û
>W1911576247
PDJW01000016
Campylobacterota
Malaciobacter mytili T234 [PDJW]
30925
30841
-
Tyr
GTA
[ENA]
¡û
>W1911576274
PDJW01000097
Campylobacterota
Malaciobacter mytili T234 [PDJW]
2002
1918
-
Tyr
GTA
[ENA]
¡û
>W1911576278
PDJX01000002
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
210274
210358
+
Tyr
GTA
[ENA]
¡û
>W1911576287
PDJX01000004
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
170056
169972
-
Tyr
GTA
[ENA]
¡û
>W1911576365
PDJY01000034
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
19908
19824
-
Tyr
GTA
[ENA]
¡û
>W1911576382
PDJY01000057
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
5847
5931
+
Tyr
GTA
[ENA]
¡û
>W1911576473
PDKC01000001
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
190418
190502
+
Tyr
GTA
[ENA]
¡û
>W1911576479
PDKC01000002
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
16400
16484
+
Tyr
GTA
[ENA]
¡û
>W1911576653
PDKG01000002
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
236370
236286
-
Tyr
GTA
[ENA]
¡û
>W1911576658
PDKG01000003
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
280626
280542
-
Tyr
GTA
[ENA]
¡û
>W1911576811
PDKJ01000021
Campylobacterota
Halarcobacter ebronensis CECT 8993 [PDKJ]
17827
17911
+
Tyr
GTA
[ENA]
¡û
>W1911576848
PDKK01000014
Campylobacterota
Halarcobacter ebronensis CECT 8441 [PDKK]
17746
17830
+
Tyr
GTA
[ENA]
¡û
>W1911576958
PDKN01000002
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
161071
160987
-
Tyr
GTA
[ENA]
¡û
>W1911576971
PDKN01000006
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
18965
19049
+
Tyr
GTA
[ENA]
¡û
>W1911577008
PDKO01000006
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [PDKO]
148627
148543
-
Tyr
GTA
[ENA]
¡û
>W1810295900
PTIW01000005
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
26949
26865
-
Tyr
GTA
[ENA]
¡û
>W1810295920
PTIW01000024
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
18707
18791
+
Tyr
GTA
[ENA]
¡û
>W1511517384
JXXG01000002
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
254799
254883
+
Tyr
GTA
[ENA]
¡û
>WENV068887
AACY023742816
Marine microbial communities from Global Ocean Sampling (GOS)
306
392
+
Tyr
GTA
[ENA]
>W1710602813
FUYO01000001
Campylobacterota
Malaciobacter marinus [FUYO]
18696
18780
+
Tyr
GTA
[ENA]
¡û
>W1710602817
FUYO01000003
Campylobacterota
Malaciobacter marinus [FUYO]
43457
43373
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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