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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96418 (117 seq.)
>W1711069162
LSFL01000007
Bacteroidota
Polaribacter reichenbachii [LSFL]
22318
22234
-
Tyr
GTA
[ENA]
¡û
>W1711069172
LSFL01000029
Bacteroidota
Polaribacter reichenbachii [LSFL]
24874
24958
+
Tyr
GTA
[ENA]
¡û
>W1711069207
LSFM01000022
Bacteroidota
Polaribacter vadi [LSFM]
200099
200183
+
Tyr
GTA
[ENA]
¡û
>W1711069215
LSFM01000022
Bacteroidota
Polaribacter vadi [LSFM]
689760
689844
+
Tyr
GTA
[ENA]
¡û
>W1711167278
LVWE01000050
Bacteroidota
Polaribacter atrinae [LVWE]
198113
198197
+
Tyr
GTA
[ENA]
¡û
>W1711167291
LVWE01000085
Bacteroidota
Polaribacter atrinae [LVWE]
227357
227273
-
Tyr
GTA
[ENA]
¡û
>W131175270
ARJD01000040
Bacteroidota
Polaribacter franzmannii ATCC 700399 [ARJD]
80668
80752
+
Tyr
GTA
[ENA]
¡û
>W131175317
ARJD01000069
Bacteroidota
Polaribacter franzmannii ATCC 700399 [ARJD]
274414
274498
+
Tyr
GTA
[ENA]
¡û
>W131184745
ARTD01000003
Bacteroidota
Flavobacterium sp. SCGC AAA160-P02 [ARTD]
2055
2139
+
Tyr
GTA
[ENA]
¡û
>W1712097602
NIDK01000004
Bacteroidota
Polaribacter haliotis [NIDK]
234851
234935
+
Tyr
GTA
[ENA]
¡û
>W1712097611
NIDK01000007
Bacteroidota
Polaribacter haliotis [NIDK]
26587
26503
-
Tyr
GTA
[ENA]
¡û
>W1712097631
NIDL01000001
Bacteroidota
Polaribacter tangerinus WS2-14 [NIDL]
598873
598789
-
Tyr
GTA
[ENA]
¡û
>C171063252
CP017477
Bacteroidota
Polaribacter vadi LPB0003 [CP017477]
1172074
1171990
-
Tyr
GTA
-
¡û
>C171063260
CP017477
Bacteroidota
Polaribacter vadi LPB0003 [CP017477]
679064
678980
-
Tyr
GTA
-
¡û
>C171074142
CP018155
Bacteroidota
Tenacibaculum todarodis LPB0136 [CP018155]
1369150
1369066
-
Tyr
GTA
-
¡û
>C171094190
CP019419
Bacteroidota
Polaribacter reichenbachii 6Alg 8T [CP019419]
2421696
2421780
+
Tyr
GTA
-
¡û
>C171094204
CP019419
Bacteroidota
Polaribacter reichenbachii 6Alg 8T [CP019419]
3309563
3309479
-
Tyr
GTA
-
¡û
>C171098446
CP019704
Bacteroidota
Polaribacter sp. BM10 [CP019704]
206215
206299
+
Tyr
GTA
-
¡û
>C171098487
CP019704
Bacteroidota
Polaribacter sp. BM10 [CP019704]
783184
783100
-
Tyr
GTA
-
¡û
>w014177
AAOG01000002
Bacteroidota
Polaribacter irgensii 23-P [AAOG]
275036
275120
+
Tyr
GTA
[ENA]
¡û
>w013076
AANA01000001
Bacteroidota
Polaribacter sp. MED152 MED152 [AANA]
1081911
1081830
-
Tyr
GTA
[ENA]
¡û
>WENV180101647
OAOV01046010
[OAOV] marine metagenome; ENVO:00002010
110
192
+
Tyr
GTA
[ENA]
¢þ
>WENV180214529
OBAP01007488
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
375
293
-
Tyr
GTA
[ENA]
¢þ
>WENV180356586
OBNL01000019
[OBNL] marine metagenome; ENVO:00002010
12473
12555
+
Tyr
GTA
[ENA]
¢þ
>WENV180376228
OBOL01285995
[OBOL] marine metagenome; Surface water
97
179
+
Tyr
GTA
[ENA]
¢þ
>WENV180384003
OBOV01137123
[OBOV] marine metagenome; ENV:00002010
96
178
+
Tyr
GTA
[ENA]
¢þ
>WENV180387712
OBPF01049828
[OBPF] marine metagenome; Sterile flask
320
238
-
Tyr
GTA
[ENA]
¢þ
>WENV180638560
OCRI01001627
[OCRI] marine metagenome; Sterile flask
2307
2225
-
Tyr
GTA
[ENA]
¢þ
>WENV181325566
OFLJ01005655
[OFLJ] seawater metagenome; seawater
1544
1462
-
Tyr
GTA
[ENA]
¢þ
>WENV182540958
OJAQ01000871
[OJAQ] seawater metagenome; Sea water
2993
2911
-
Tyr
GTA
[ENA]
¢þ
>WENV182547667
OJBT01000336
[OJBT] seawater metagenome; Sea water
2128
2046
-
Tyr
GTA
[ENA]
¢þ
>WENV182548843
OJBX01000448
[OJBX] seawater metagenome; Sea water
3516
3598
+
Tyr
GTA
[ENA]
¢þ
>WENV182551024
OJCB01006860
[OJCB] seawater metagenome; Sea water
2052
2134
+
Tyr
GTA
[ENA]
¢þ
>WENV182552580
OJCL01001916
[OJCL] seawater metagenome; Sea water
321
403
+
Tyr
GTA
[ENA]
¢þ
>WENV182552744
OJCO01002645
[OJCO] seawater metagenome; Sea water
582
500
-
Tyr
GTA
[ENA]
¢þ
>WENV182553957
OJCR01066909
[OJCR] seawater metagenome; Sea water
423
341
-
Tyr
GTA
[ENA]
¢þ
>WENV182554981
OJCY01000238
[OJCY] seawater metagenome; Sea water
1802
1884
+
Tyr
GTA
[ENA]
¢þ
>WENV182555595
OJDC01003362
[OJDC] seawater metagenome; Sea water
1151
1069
-
Tyr
GTA
[ENA]
¢þ
>WENV182558007
OJDL01001718
[OJDL] seawater metagenome; Sea water
4328
4410
+
Tyr
GTA
[ENA]
¢þ
>WENV182558659
OJDN01000209
[OJDN] seawater metagenome; Sea water
1550
1632
+
Tyr
GTA
[ENA]
¢þ
>WENV182559491
OJDP01021603
[OJDP] seawater metagenome; Sea water
160
78
-
Tyr
GTA
[ENA]
¢þ
>WENV182560345
OJDU01000035
[OJDU] seawater metagenome; Sea water
29446
29528
+
Tyr
GTA
[ENA]
¢þ
>WENV182561553
OJDW01009288
[OJDW] seawater metagenome; Sea water
217
299
+
Tyr
GTA
[ENA]
¢þ
>WENV182564413
OJEF01000056
[OJEF] seawater metagenome; Sea water
15849
15767
-
Tyr
GTA
[ENA]
¢þ
>WENV182564757
OJEF01005385
[OJEF] seawater metagenome; Sea water
2538
2620
+
Tyr
GTA
[ENA]
¢þ
>WENV182565513
OJEH01009677
[OJEH] seawater metagenome; Sea water
982
1064
+
Tyr
GTA
[ENA]
¢þ
>WENV182567424
OJEO01000730
[OJEO] seawater metagenome; Sea water
10714
10632
-
Tyr
GTA
[ENA]
¢þ
>WENV182567795
OJEP01000266
[OJEP] seawater metagenome; Sea water
5958
5876
-
Tyr
GTA
[ENA]
¢þ
>WENV182569183
OJEY01001809
[OJEY] seawater metagenome; Sea water
1175
1257
+
Tyr
GTA
[ENA]
¢þ
>WENV182570165
OJFB01023794
[OJFB] seawater metagenome; Sea water
113
195
+
Tyr
GTA
[ENA]
¢þ
>WENV182571489
OJFK01000130
[OJFK] seawater metagenome; Sea water
4451
4533
+
Tyr
GTA
[ENA]
¢þ
>WENV182572503
OJFL01015057
[OJFL] seawater metagenome; Sea water
1074
992
-
Tyr
GTA
[ENA]
¢þ
>WENV182572758
OJFM01012153
[OJFM] seawater metagenome; Sea water
751
669
-
Tyr
GTA
[ENA]
¢þ
>WENV182573035
OJFP01000011
[OJFP] seawater metagenome; Sea water
662
580
-
Tyr
GTA
[ENA]
¢þ
>WENV182574110
OJFR01000054
[OJFR] seawater metagenome; Sea water
13424
13342
-
Tyr
GTA
[ENA]
¢þ
>WENV182576254
OJFX01006618
[OJFX] seawater metagenome; Sea water
1450
1368
-
Tyr
GTA
[ENA]
¢þ
>WENV182577551
OJGG01003432
[OJGG] seawater metagenome; Sea water
164
246
+
Tyr
GTA
[ENA]
¢þ
>WENV182578642
OJGP01000002
[OJGP] seawater metagenome; Sea water
59133
59051
-
Tyr
GTA
[ENA]
¢þ
>WENV182579126
OJGS01000757
[OJGS] seawater metagenome; Sea water
156
74
-
Tyr
GTA
[ENA]
¢þ
>WENV182586971
OJHK01020994
[OJHK] seawater metagenome; Sea water
745
663
-
Tyr
GTA
[ENA]
¢þ
>WENV182588558
OJHU01001937
[OJHU] seawater metagenome; Sea water
168
250
+
Tyr
GTA
[ENA]
¢þ
>WENV182589663
OJIF01000624
[OJIF] seawater metagenome; Sea water
196
278
+
Tyr
GTA
[ENA]
¢þ
>WENV182590792
OJIK01000636
[OJIK] seawater metagenome; Sea water
9898
9816
-
Tyr
GTA
[ENA]
¢þ
>WENV182591603
OJIO01000689
[OJIO] seawater metagenome; Sea water
18873
18955
+
Tyr
GTA
[ENA]
¢þ
>WENV182593010
OJIS01008186
[OJIS] seawater metagenome; Sea water
1955
1873
-
Tyr
GTA
[ENA]
¢þ
>WENV182593239
OJIT01010993
[OJIT] seawater metagenome; Sea water
217
299
+
Tyr
GTA
[ENA]
¢þ
>WENV182594144
OJIV01000682
[OJIV] seawater metagenome; Sea water
1885
1803
-
Tyr
GTA
[ENA]
¢þ
>WENV183056058
OLHI01000002
[OLHI] seawater metagenome; Sea water
151770
151688
-
Tyr
GTA
[ENA]
¢þ
>WENV183056146
OLHI01000305
[OLHI] seawater metagenome; Sea water
686
604
-
Tyr
GTA
[ENA]
¢þ
>WENV183057781
OLHM01004531
[OLHM] seawater metagenome; Sea water
1702
1620
-
Tyr
GTA
[ENA]
¢þ
>WENV183058806
OLHR01012680
[OLHR] seawater metagenome; Sea water
497
579
+
Tyr
GTA
[ENA]
¢þ
>WENV183060817
OLHY01006563
[OLHY] seawater metagenome; Sea water
504
422
-
Tyr
GTA
[ENA]
¢þ
>WENV183061145
OLHZ01000246
[OLHZ] seawater metagenome; Sea water
511
429
-
Tyr
GTA
[ENA]
¢þ
>WENV183062156
OLID01000196
[OLID] seawater metagenome; Sea water
22129
22211
+
Tyr
GTA
[ENA]
¢þ
>WENV183617721
OOEG01061639
[OOEG] marine metagenome; sea ice
25
107
+
Tyr
GTA
[ENA]
¢þ
>WENV183618218
OOFN01006513
[OOFN] marine metagenome; seawater
187
105
-
Tyr
GTA
[ENA]
¢þ
>WENV183619368
OOFQ01002448
[OOFQ] marine metagenome; seawater
2365
2283
-
Tyr
GTA
[ENA]
¢þ
>WENV183623210
OOFX01032732
[OOFX] marine metagenome; sea ice
89
173
+
Tyr
GTA
[ENA]
¢þ
>WENV183628298
OOGN01006658
[OOGN] marine metagenome; sea ice
987
1069
+
Tyr
GTA
[ENA]
¢þ
>WENV170274552
CERM01024463
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
82
166
+
Tyr
GTA
[ENA]
¢þ
>WENV170298311
CESF01088196
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
144
60
-
Tyr
GTA
[ENA]
¢þ
>WENV170537349
CEWR01000847
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
139
55
-
Tyr
GTA
[ENA]
¢þ
>WENV170619549
FUWD013016251
[FUWD] metagenome; unknown
575
491
-
Tyr
GTA
[ENA]
¢þ
>WENV170620005
FUWD013024434
[FUWD] metagenome; unknown
1080
1164
+
Tyr
GTA
[ENA]
¢þ
>WENV170625396
FUWD013197165
[FUWD] metagenome; unknown
123
207
+
Tyr
GTA
[ENA]
¢þ
>WENV170626842
FUWD013229782
[FUWD] metagenome; unknown
6653
6737
+
Tyr
GTA
[ENA]
¢þ
>WENV170626873
FUWD013229934
[FUWD] metagenome; unknown
2825
2741
-
Tyr
GTA
[ENA]
¢þ
>WENV170627030
FUWD013230812
[FUWD] metagenome; unknown
76564
76648
+
Tyr
GTA
[ENA]
¢þ
>WENV170627478
FUWD013232937
[FUWD] metagenome; unknown
8571
8487
-
Tyr
GTA
[ENA]
¢þ
>WENV170627655
FUWD013234861
[FUWD] metagenome; unknown
575
491
-
Tyr
GTA
[ENA]
¢þ
>WENV170628083
FUWD013241624
[FUWD] metagenome; unknown
12395
12311
-
Tyr
GTA
[ENA]
¢þ
>WENV170633636
FUWD013399756
[FUWD] metagenome; unknown
123
207
+
Tyr
GTA
[ENA]
¢þ
>WENV170820284
MDSY01001753
[MDSY] marine metagenome; seawater
15
99
+
Tyr
GTA
[ENA]
¢þ
>WENV170929485
MDTG01150712
[MDTG] marine metagenome; seawater
251
167
-
Tyr
GTA
[ENA]
¢þ
>WENV170950191
MEHZ011482886
[MEHZ] marine metagenome; marine surface water
153
69
-
Tyr
GTA
[ENA]
¢þ
>C181113421
CP025119
Bacteroidota
Polaribacter sp. ALD11 [CP025119]
1486811
1486729
-
Tyr
GTA
-
¡û
>C181113430
CP025119
Bacteroidota
Polaribacter sp. ALD11 [CP025119]
691038
690956
-
Tyr
GTA
-
¡û
>W141563400
JHZZ01000001
Bacteroidota
Polaribacter sp. Hel_I_88 [JHZZ]
2669279
2669363
+
Tyr
GTA
[ENA]
¡û
>W141563417
JHZZ01000001
Bacteroidota
Polaribacter sp. Hel_I_88 [JHZZ]
3433606
3433522
-
Tyr
GTA
[ENA]
¡û
>W1910796536
MSCK01000001
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
1621081
1621163
+
Tyr
GTA
[ENA]
¡û
>W1910796537
MSCK01000001
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
1621295
1621377
+
Tyr
GTA
[ENA]
¡û
>W1910796552
MSCK01000002
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
1466617
1466699
+
Tyr
GTA
[ENA]
¡û
>W1810173134
PJMV01000001
Bacteroidota
Polaribacter sp. Hel1_33_96 [PJMV]
1916171
1916089
-
Tyr
GTA
[ENA]
¡û
>W1511296863
JPDI01000001
Bacteroidota
Polaribacter sp. Hel1_33_49 [JPDI]
1409040
1409124
+
Tyr
GTA
[ENA]
¡û
>W1511297069
JPDS01000001
Bacteroidota
Polaribacter sp. Hel1_85 [JPDS]
1336621
1336537
-
Tyr
GTA
[ENA]
¡û
>W1511576826
LAQA01000020
Bacteroidota
Flavobacteriaceae bacterium ASP10-09a [LAQA]
63878
63962
+
Tyr
GTA
[ENA]
¡û
>W1511694610
LGBR01000001
Bacteroidota
Polaribacter dokdonensis DSW-5 [LGBR]
85507
85423
-
Tyr
GTA
[ENA]
¡û
>C131013439
CP004349
Bacteroidota
Polaribacter sp. MED152 [CP004349]
1076029
1075945
-
Tyr
GTA
[Ensembl]
¡û
>WENV074343
AACY023970415
Marine microbial communities from Global Ocean Sampling (GOS)
283
369
+
Tyr
GTA
[ENA]
>W1610909690
LSFL01000007
Bacteroidota
Polaribacter reichenbachii [LSFL]
22318
22234
-
Tyr
GTA
[ENA]
¡û
>W1610909700
LSFL01000029
Bacteroidota
Polaribacter reichenbachii [LSFL]
24874
24958
+
Tyr
GTA
[ENA]
¡û
>W1610909735
LSFM01000022
Bacteroidota
Polaribacter vadi [LSFM]
200099
200183
+
Tyr
GTA
[ENA]
¡û
>W1610909743
LSFM01000022
Bacteroidota
Polaribacter vadi [LSFM]
689760
689844
+
Tyr
GTA
[ENA]
¡û
>W1610977609
LVWE01000050
Bacteroidota
Polaribacter atrinae [LVWE]
198113
198197
+
Tyr
GTA
[ENA]
¡û
>W1610977622
LVWE01000085
Bacteroidota
Polaribacter atrinae [LVWE]
227357
227273
-
Tyr
GTA
[ENA]
¡û
>WENV078351
AAGA01001015
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
2024
1940
-
Tyr
GTA
[ENA]
>W1710537998
FNUE01000002
Bacteroidota
Polaribacter dokdonensis DSW-5 [FNUE]
1183968
1183884
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK