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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96640 (78 seq.)
>W1710865234
LMGN01000001
Alphaproteobacteria
Rhizobium sp. Root564 [LMGN]
562912
562828
-
Leu
CAA
[ENA]
¡û
>W1710869995
LMKD01000013
Alphaproteobacteria
Rhizobium sp. Leaf202 [LMKD]
130304
130220
-
Leu
CAA
[ENA]
¡û
>W1710872002
LMLQ01000013
Alphaproteobacteria
Rhizobium sp. Leaf68 [LMLQ]
130307
130223
-
Leu
CAA
[ENA]
¡û
>W1710873054
LMMM01000015
Alphaproteobacteria
Rhizobium sp. Leaf262 [LMMM]
323275
323191
-
Leu
CAA
[ENA]
¡û
>W1710874930
LMNZ01000021
Alphaproteobacteria
Rhizobium sp. Leaf311 [LMNZ]
67211
67127
-
Leu
CAA
[ENA]
¡û
>W1710875902
LMOT01000009
Alphaproteobacteria
Rhizobium sp. Leaf155 [LMOT]
795539
795623
+
Leu
CAA
[ENA]
¡û
>W1710883224
LMVL01000034
Alphaproteobacteria
Agrobacterium vitis [LMVL]
61869
61785
-
Leu
CAA
[ENA]
¡û
>W1710916273
LNUW01000035
Alphaproteobacteria
Agrobacterium bohemicum R89-1 [LNUW]
28005
28089
+
Leu
CAA
[ENA]
¡û
>W1711214028
LXKU01000022
Alphaproteobacteria
Agrobacterium rubi [LXKU]
300987
300903
-
Leu
CAA
[ENA]
¡û
>W1711315246
MAVS01000070
Alphaproteobacteria
Agrobacterium vitis [MAVS]
418610
418694
+
Leu
CAA
[ENA]
¡û
>W1711325900
MBEV01000009
Alphaproteobacteria
Agrobacterium vitis [MBEV]
171200
171284
+
Leu
CAA
[ENA]
¡û
>W1711325944
MBEX01000010
Alphaproteobacteria
Agrobacterium vitis [MBEX]
418615
418699
+
Leu
CAA
[ENA]
¡û
>W1711326046
MBEZ01000007
Alphaproteobacteria
Agrobacterium vitis [MBEZ]
51260
51176
-
Leu
CAA
[ENA]
¡û
>W1711326136
MBFB01000009
Alphaproteobacteria
Agrobacterium vitis [MBFB]
24757
24673
-
Leu
CAA
[ENA]
¡û
>W1711326188
MBFC01000039
Alphaproteobacteria
Agrobacterium vitis [MBFC]
45994
45910
-
Leu
CAA
[ENA]
¡û
>W1711326241
MBFD01000018
Alphaproteobacteria
Agrobacterium vitis [MBFD]
12594
12510
-
Leu
CAA
[ENA]
¡û
>W1711326294
MBFE01000033
Alphaproteobacteria
Agrobacterium vitis [MBFE]
170946
171030
+
Leu
CAA
[ENA]
¡û
>W131160086
AQWH01000009
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
94949
94865
-
Leu
CAA
[ENA]
¡û
>W1711489086
MKIM01000031
Alphaproteobacteria
Rhizobium oryziradicis [MKIM]
408159
408243
+
Leu
CAA
[ENA]
¡û
>W1711489122
MKIN01000023
Alphaproteobacteria
Allorhizobium taibaishanense [MKIN]
44519
44435
-
Leu
CAA
[ENA]
¡û
>W1711765488
MUXO01000043
Alphaproteobacteria
Pseudorhizobium flavum [MUXO]
40993
41077
+
Leu
CAA
[ENA]
¡û
>W1711959669
NBZE01000015
Alphaproteobacteria
Allorhizobium ampelinum vitis [NBZE]
46685
46601
-
Leu
CAA
[ENA]
¡û
>C171104998
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
1093709
1093793
+
Leu
CAA
-
¡û
>WENV181167023
OEIU01006647
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
903
819
-
Leu
CAA
[ENA]
¢þ
>W141180659
AYGY02000038
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
17953
17869
-
Leu
CAA
[ENA]
¡û
>W141237983
BBJU01000029
Alphaproteobacteria
Agrobacterium rubi NBRC 13261 [BBJU]
65289
65373
+
Leu
CAA
[ENA]
¡û
>W141276522
JADW01000004
Alphaproteobacteria
Agrobacterium larrymoorei ATCC 51759 [JADW]
88128
88044
-
Leu
CAA
[ENA]
¡û
>WENV183735883
PJUB01007860
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
92
8
-
Leu
CAA
[ENA]
¢þ
>WENV183735896
PJUB01009365
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
858
774
-
Leu
CAA
[ENA]
¢þ
>WENV183735978
PJUB01023058
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
19
103
+
Leu
CAA
[ENA]
¢þ
>WENV183736679
PJUC01039610
[PJUC] soil metagenome; Soil enriched on filter paper
40
124
+
Leu
CAA
[ENA]
¢þ
>WENV170229868
CEQG01215618
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
470
386
-
Leu
CAA
[ENA]
¢þ
>WENV170441566
CEUV01219081
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
331
415
+
Leu
CAA
[ENA]
¢þ
>WENV170499343
CEVT01147891
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
656
740
+
Leu
CAA
[ENA]
¢þ
>WENV170655696
JTFN01059045
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
157
241
+
Leu
CAA
[ENA]
¢þ
>WENV170787167
MDSV01014392
[MDSV] marine metagenome; seawater
24987
25071
+
Leu
CAA
[ENA]
¢þ
>WENV170828015
MDSY01141014
[MDSY] marine metagenome; seawater
1290
1206
-
Leu
CAA
[ENA]
¢þ
>WENV170846507
MDTA01043546
[MDTA] marine metagenome; seawater
84
168
+
Leu
CAA
[ENA]
¢þ
>WENV170906268
MDTE01036321
[MDTE] marine metagenome; seawater
2538
2622
+
Leu
CAA
[ENA]
¢þ
>C191035813
CP025512
Alphaproteobacteria
Neorhizobium sp. SOG26 [CP025512]
2565551
2565635
+
Leu
CAA
-
¡û
>C191170932
CP039692
Alphaproteobacteria
Agrobacterium larrymoorei CFBP5473 [CP039691, CP039692]
851052
851136
+
Leu
CAA
-
¡û
>W141560481
JHXQ01000004
Alphaproteobacteria
Allorhizobium undicola ORS 992 = ATCC 700741 [JHXQ]
40269
40353
+
Leu
CAA
[ENA]
¡û
>W1910226224
FMUD01000004
Alphaproteobacteria
Agrobacterium sp. DSM 25558 [FMUD]
4215
4131
-
Leu
CAA
[ENA]
¡û
>W1910226268
FMUE01000002
Alphaproteobacteria
Agrobacterium rosae DSM 25559 [FMUE]
495602
495518
-
Leu
CAA
[ENA]
¡û
>C09100955
CP000633
Alphaproteobacteria
Allorhizobium ampelinum S4 [CP000633, CP000634]
3369128
3369044
-
Leu
CAA
[Ensembl]
¡û
>W1911422609
NXEJ01000008
Alphaproteobacteria
Agrobacterium rosae NCPPB 1650 [NXEJ]
656500
656416
-
Leu
CAA
[ENA]
¡û
>W1810084217
PEQT01000003
Alphaproteobacteria
Agrobacterium rosae B20.3 [PEQT]
655466
655382
-
Leu
CAA
[ENA]
¡û
>W1810089072
PGEL01000025
Alphaproteobacteria
Agrobacterium bohemicum R90 [PGEL]
28004
28088
+
Leu
CAA
[ENA]
¡û
>W1810346005
PVBF01000013
Alphaproteobacteria
Neorhizobium tomejilense T20_22 [PVBF]
45563
45647
+
Leu
CAA
[ENA]
¡û
>W1810346039
PVBG01000010
Alphaproteobacteria
Neorhizobium tomejilense T17_20 [PVBG]
165118
165034
-
Leu
CAA
[ENA]
¡û
>W1810346091
PVBH01000014
Alphaproteobacteria
Neorhizobium tomejilense T11_12 [PVBH]
149234
149150
-
Leu
CAA
[ENA]
¡û
>W1810346145
PVBI01000012
Alphaproteobacteria
Neorhizobium sp. T25_13 [PVBI]
112724
112640
-
Leu
CAA
[ENA]
¡û
>W1810346193
PVBJ01000014
Alphaproteobacteria
Neorhizobium sp. T25_27 [PVBJ]
118328
118244
-
Leu
CAA
[ENA]
¡û
>W1810346246
PVBK01000029
Alphaproteobacteria
Neorhizobium sp. T7_12 [PVBK]
45563
45647
+
Leu
CAA
[ENA]
¡û
>W1810346319
PVBM01000011
Alphaproteobacteria
Neorhizobium huautlense DSM 21817 [PVBM]
47037
47121
+
Leu
CAA
[ENA]
¡û
>W1810365584
PVUG01000009
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
146743
146659
-
Leu
CAA
[ENA]
¡û
>W1810537724
QDFK01000002
Alphaproteobacteria
Sphingomonas sp. TPD3009 [QDFK]
482876
482792
-
Leu
CAA
[ENA]
¡û
>W1810537770
QDFL01000002
Alphaproteobacteria
Agrobacterium tumefaciens TPD7005 [QDFL]
482876
482792
-
Leu
CAA
[ENA]
¡û
>W1810538254
QDFR01000002
Alphaproteobacteria
Rhizobium rhizogenes TPD7009 [QDFR]
291150
291066
-
Leu
CAA
[ENA]
¡û
>W1810659813
QJKM01000027
Alphaproteobacteria
Rhizobium terrae NAU-18 [QJKM]
19863
19947
+
Leu
CAA
[ENA]
¡û
>SRA1016530
SRR023846.544874
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
87
3
-
Leu
CAA
[SRA]
>C151098047
FO082820
Alphaproteobacteria
Pseudorhizobium banfieldiae NT-26 [FO082820]
3326898
3326982
+
Leu
CAA
[Ensembl]
¡û
>C151101721
HG938355
Alphaproteobacteria
Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI HAMBI 1141 [HG938355]
410927
410843
-
Leu
CAA
[Ensembl]
¡û
>W1511318832
JPYQ01000055
Alphaproteobacteria
Rhizobium sp. YS-1r [JPYQ]
524315
524231
-
Leu
CAA
[ENA]
¡û
>W1511509197
JXQV01000043
Alphaproteobacteria
Agrobacterium tumefaciens MEJ076 [JXQV]
68681
68597
-
Leu
CAA
[ENA]
¡û
>C161070376
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
3759801
3759717
-
Leu
CAA
[Ensembl]
¡û
>W1610727580
LMGN01000001
Alphaproteobacteria
Rhizobium sp. Root564 [LMGN]
562912
562828
-
Leu
CAA
[ENA]
¡û
>W1610732341
LMKD01000013
Alphaproteobacteria
Rhizobium sp. Leaf202 [LMKD]
130304
130220
-
Leu
CAA
[ENA]
¡û
>W1610734348
LMLQ01000013
Alphaproteobacteria
Rhizobium sp. Leaf68 [LMLQ]
130307
130223
-
Leu
CAA
[ENA]
¡û
>W1610735400
LMMM01000015
Alphaproteobacteria
Rhizobium sp. Leaf262 [LMMM]
323275
323191
-
Leu
CAA
[ENA]
¡û
>W1610737276
LMNZ01000021
Alphaproteobacteria
Rhizobium sp. Leaf311 [LMNZ]
67211
67127
-
Leu
CAA
[ENA]
¡û
>W1610738248
LMOT01000009
Alphaproteobacteria
Rhizobium sp. Leaf155 [LMOT]
795539
795623
+
Leu
CAA
[ENA]
¡û
>W1610745150
LMVL01000034
Alphaproteobacteria
Agrobacterium vitis [LMVL]
61869
61785
-
Leu
CAA
[ENA]
¡û
>W1610774512
LNUW01000035
Alphaproteobacteria
Agrobacterium bohemicum R89-1 [LNUW]
28005
28089
+
Leu
CAA
[ENA]
¡û
>W1611001032
LXKU01000022
Alphaproteobacteria
Agrobacterium rubi [LXKU]
300987
300903
-
Leu
CAA
[ENA]
¡û
>W1710596589
FTMR01000006
Alphaproteobacteria
Rhizobium sp. RU35A [FTMR]
28535
28451
-
Leu
CAA
[ENA]
¡û
>W1710606400
FWXU01000006
Alphaproteobacteria
Rhizobium sp. RU36D [FWXU]
256371
256455
+
Leu
CAA
[ENA]
¡û
>W1710607625
FXAF01000001
Alphaproteobacteria
Xaviernesmea oryzae [FXAF]
47805
47889
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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