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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96640 (10 seq.)
>WENV183708960
PDWI01021864
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
6179
6094
-
Leu
GAG
[ENA]
¡û
>WENV183717459
PDWJ01000952
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
8948
8863
-
Leu
GAG
[ENA]
¡û
>C191084721
CP032125
Alphaproteobacteria
Profundibacter amoris BAR1 [CP032125]
2804767
2804682
-
Leu
GAG
-
¡û
>W1810685666
QKZL01000004
Alphaproteobacteria
Palleronia aestuarii DSM 22009 [QKZL]
296381
296296
-
Leu
GAG
[ENA]
¡û
>W2010634273
JABUFE010000013
Alphaproteobacteria
Sulfitobacter sp. 1151 [JABUFE]
16176
16261
+
Leu
GAG
[ENA]
¡û
>W2011643077
SNAA01000005
Alphaproteobacteria
Primorskyibacter sp. SS33 [SNAA]
81894
81809
-
Leu
GAG
[ENA]
¡û
>W2011756422
SZZN01000001
Alphaproteobacteria
Roseovarius sp. MK6-18 [SZZN]
192379
192464
+
Leu
GAG
[ENA]
¡û
>ENV09001662
ACQI01001411
Hydrothermal vent metagenome LCHCB.C1
1141
1226
+
Leu
GAG
[ENA]
¡û
>C241329701
CP136759
Alphaproteobacteria
Palleronia sp. LCG004 [CP136759]
2289705
2289620
-
Leu
GAG
-
¡û
>W1710562811
FOPF01000003
Alphaproteobacteria
Palleronia marisminoris [FOPF]
244407
244322
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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