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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96671 (35 seq.)
>W1711409524
MGOU01000040
Bacillota
Clostridiales bacterium GWD2_32_19 [MGOU]
4951
5034
+
Tyr
GTA
[ENA]
¡û
>W1711409533
MGOU01000045
Bacillota
Clostridiales bacterium GWD2_32_19 [MGOU]
1387
1470
+
Tyr
GTA
[ENA]
¡û
>W1711409544
MGOV01000024
Bacillota
Clostridiales bacterium GWD2_32_59 [MGOV]
10330
10247
-
Tyr
GTA
[ENA]
¡û
>W1711409554
MGOV01000036
Bacillota
Clostridiales bacterium GWD2_32_59 [MGOV]
15032
15115
+
Tyr
GTA
[ENA]
¡û
>W1711409593
MGOW01000037
Bacillota
Clostridiales bacterium GWE2_32_10 [MGOW]
7279
7362
+
Tyr
GTA
[ENA]
¡û
>W1711409597
MGOW01000048
Bacillota
Clostridiales bacterium GWE2_32_10 [MGOW]
1594
1677
+
Tyr
GTA
[ENA]
¡û
>C171064253
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2590769
2590853
+
Tyr
GTA
-
¡û
>C171064280
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2618848
2618932
+
Tyr
GTA
-
¡û
>C171064316
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
715610
715526
-
Tyr
GTA
-
¡û
>C171064350
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
695369
695285
-
Tyr
GTA
-
¡û
>C171064362
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
688643
688559
-
Tyr
GTA
-
¡û
>C171109200
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1396595
1396679
+
Tyr
GTA
-
¡û
>C171109227
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1424673
1424757
+
Tyr
GTA
-
¡û
>C171109258
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4108162
4108078
-
Tyr
GTA
-
¡û
>C171109292
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4087921
4087837
-
Tyr
GTA
-
¡û
>C171109304
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4081195
4081111
-
Tyr
GTA
-
¡û
>C000802
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
1843166
1843250
+
Tyr
GTA
[Ensembl]
¡û
>C000830
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4446344
4446260
-
Tyr
GTA
[Ensembl]
¡û
>C000874
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4429891
4429807
-
Tyr
GTA
[Ensembl]
¡û
>w017070
AAQV01000074
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
1464
1383
-
Tyr
GTA
[ENA]
¡û
>w017060
AAQV01000071
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
1192
1106
-
Tyr
GTA
[ENA]
¡û
>w017001
AAQV01000011
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
63383
63302
-
Tyr
GTA
[ENA]
¡û
>w010424
AAKU01000148
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
5150
5234
+
Tyr
GTA
[ENA]
¡û
>w010400
AAKU01000026
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
1671
1757
+
Tyr
GTA
[ENA]
¡û
>w010385
AAKU01000002
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
1750
1834
+
Tyr
GTA
[ENA]
¡û
>C08000755
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2610544
2610463
-
Tyr
GTA
[Ensembl]
¡û
>C08000766
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2604219
2604138
-
Tyr
GTA
[Ensembl]
¡û
>C08000792
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
1916233
1916152
-
Tyr
GTA
[Ensembl]
¡û
>WENV183715412
PDWI01239411
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
455
539
+
Tyr
GTA
[ENA]
¢þ
>WENV183721611
PDWJ01077373
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
453
537
+
Tyr
GTA
[ENA]
¢þ
>W141561143
JHYF01000002
Bacillota
Alkaliphilus transvaalensis ATCC 700919 [JHYF]
566
650
+
Tyr
GTA
[ENA]
¡û
>W1911116967
NOKA02000072
Bacillota
Lachnotalea glycerini CCRI-19302 [NOKA]
398
481
+
Tyr
GTA
[ENA]
¡û
>W1810628767
QICS01000021
Bacillota
Lachnotalea glycerini DSM 28816 [QICS]
510
593
+
Tyr
GTA
[ENA]
¡û
>W1710504737
FMKA01000035
Bacillota
Anaerobium acetethylicum [FMKA]
597
680
+
Tyr
GTA
[ENA]
¡û
>W1710506700
FMUS01000070
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
1242
1158
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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