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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96676 (24 seq.)
>C171092391
CP019342
Bacteroidota
Nonlabens tegetincola NBRC 100970 [CP019342]
17810
17726
-
Leu
CAA
-
¡û
>w015425
AAPD01000001
Bacteroidota
Flavobacteria bacterium BBFL7 [AAPD]
887185
887269
+
Leu
CAA
[ENA]
¡û
>W141238380
BBLG01000001
Bacteroidota
Nonlabens ulvanivorans [BBLG]
663158
663240
+
Leu
CAA
[ENA]
¡û
>W141238759
BBMJ01000001
Bacteroidota
Nonlabens ulvanivorans [BBMJ]
424791
424873
+
Leu
CAA
[ENA]
¡û
>W141238788
BBMK01000001
Bacteroidota
Nonlabens ulvanivorans [BBMK]
881171
881253
+
Leu
CAA
[ENA]
¡û
>W141238812
BBML01000001
Bacteroidota
Nonlabens tegetincola sediminis [BBML]
148809
148893
+
Leu
CAA
[ENA]
¡û
>W141238841
BBMM01000001
Bacteroidota
Nonlabens ulvanivorans [BBMM]
617321
617403
+
Leu
CAA
[ENA]
¡û
>WENV170783403
MAAC01016642
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
13304
13388
+
Leu
CAA
[ENA]
¢þ
>C181113297
CP025116
Bacteroidota
Nonlabens sp. MB-3u-79 [CP025116]
1335389
1335307
-
Leu
CAA
-
¡û
>C191127228
CP034549
Bacteroidota
Nonlabens ponticola MJ115 [CP034549]
958789
958871
+
Leu
CAA
-
¡û
>W141805217
JPJI01000032
Bacteroidota
Nonlabens ulvanivorans [JPJI]
214478
214396
-
Leu
CAA
[ENA]
¡û
>W1910785621
MQUC01000003
Bacteroidota
Nonlabens agnitus JCM 17109 [MQUC]
3036368
3036450
+
Leu
CAA
[ENA]
¡û
>W1910785671
MQVV01000012
Bacteroidota
Nonlabens tegetincola JCM 12886 [MQVV]
143462
143380
-
Leu
CAA
[ENA]
¡û
>W1910785716
MQVW01000022
Bacteroidota
Nonlabens xylanidelens DSM 16809 [MQVW]
174364
174282
-
Leu
CAA
[ENA]
¡û
>W1910805298
MTPW01000001
Bacteroidota
Nonlabens arenilitoris KCTC 32109 [MTPW]
1702257
1702339
+
Leu
CAA
[ENA]
¡û
>W1810296284
PTJE01000001
Bacteroidota
Nonlabens xylanidelens DSM 16809 [PTJE]
164762
164680
-
Leu
CAA
[ENA]
¡û
>W1810356562
PVNA01000001
Bacteroidota
Nonlabens ulvanivorans DSM 22727 [PVNA]
214015
213933
-
Leu
CAA
[ENA]
¡û
>W1810685938
QKZR01000001
Bacteroidota
Nonlabens dokdonensis DSM 17205 [QKZR]
850499
850581
+
Leu
CAA
[ENA]
¡û
>W1510012982
BBNT01000004
Bacteroidota
Nonlabens ulvanivorans JCM 19275 [BBNT]
211048
210966
-
Leu
CAA
[ENA]
¡û
>C161000313
AP014548
Bacteroidota
Nonlabens marinus S1-08 [AP014548]
468284
468202
-
Leu
CAA
[Ensembl]
¡û
>C161034402
CP011373
Bacteroidota
Nonlabens sp. MIC269 [CP011373]
1214876
1214960
+
Leu
CAA
[Ensembl]
¡û
>C131001084
CP001397
Bacteroidota
Nonlabens dokdonensis DSW-6 [CP001397]
1071064
1071146
+
Leu
CAA
[Ensembl]
¡û
>W1610584176
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
1084411
1084495
+
Leu
CAA
[ENA]
¡û
>W1710703324
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
1084411
1084495
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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