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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96685 (4 seq.)
>WENV170775127
LXOW01013360
[LXOW] bovine gut metagenome; Cow rumen
1
86
+
Tyr
GTA
[ENA]
¡û
>WENV170777010
LXOW01235599
[LXOW] bovine gut metagenome; Cow rumen
1969
1884
-
Tyr
GTA
[ENA]
¡û
>W2110105077
CAJGDE010000108
Kiritimatiellota
Kiritimatiellae bacterium [CAJGDE]
221
306
+
Tyr
GTA
[ENA]
¡û
>W2110105099
CAJGDM010000034
Kiritimatiellota
Kiritimatiellae bacterium [CAJGDM]
22612
22697
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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