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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96696 (7 seq.)
>WENV180760402
ODHZ01000782
[ODHZ] human metagenome; G_DNA_Stool
35376
35291
-
Leu
GAG
[ENA]
¡û
>WENV181807841
OGSQ01000356
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
78
163
+
Leu
GAG
[ENA]
¡û
>WENV181817677
OGTN01003229
[OGTN] human gut metagenome; fecal sample 5 from infant 4
38
123
+
Leu
GAG
[ENA]
¡û
>W2011686968
SRYR01000001
Bacillota
Clostridium sartagoforme NM50_B9-20 [SRYR]
145015
145100
+
Leu
GAG
[ENA]
¡û
>W2110261137
JACSQZ010000006
Bacillota
Clostridium sp. Sa3CUN1 [JACSQZ]
52664
52749
+
Leu
GAG
[ENA]
¡û
>W1610501280
FLKB01000016
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
1214545
1214460
-
Leu
GAG
[ENA]
¡û
>W1710494750
FLKB01000016
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
1214545
1214460
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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