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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96852 (52 seq.)
>W1711283062
LZOF01000025
Spirochaetota
Brachyspira hampsonii [LZOF]
159194
159275
+
Leu
GAG
[ENA]
¡û
>W1711283116
LZOG01000172
Spirochaetota
Brachyspira hampsonii [LZOG]
2044
1963
-
Leu
GAG
[ENA]
¡û
>W1711307492
MAOX01000030
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
24588
24669
+
Leu
GAG
[ENA]
¡û
>W1711307514
MAOY01000007
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
138672
138753
+
Leu
GAG
[ENA]
¡û
>W1711351549
MDCO01000001
Spirochaetota
Brachyspira hampsonii [MDCO]
538423
538342
-
Leu
GAG
[ENA]
¡û
>W1711507061
MKXF01000036
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
11252
11171
-
Leu
GAG
[ENA]
¡û
>W131093668
AOMM01000559
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
450
531
+
Leu
GAG
[ENA]
¡û
>W131182388
ARQI01000107
Spirochaetota
Brachyspira innocens ATCC 29796 [ARQI]
17248
17167
-
Leu
GAG
[ENA]
¡û
>W131184511
ARSY01000048
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
97967
98048
+
Leu
GAG
[ENA]
¡û
>WENV180116975
OARB01001723
[OARB] human gut metagenome; ENVO:feces
410
329
-
Leu
GAG
[ENA]
¢þ
>WENV180117713
OARM01000014
[OARM] human gut metagenome; ENVO:feces
83287
83368
+
Leu
GAG
[ENA]
¢þ
>W141037641
ALNZ01000027
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
21154
21073
-
Leu
GAG
[ENA]
¡û
>WENV180405000
OBSA01125104
[OBSA] human gut metagenome; ENVO:feces
80
163
+
Leu
GAG
[ENA]
¢þ
>W141275714
JADF01000002
Spirochaetota
Brachyspira alvinipulli ATCC 51933 [JADF]
222300
222381
+
Leu
GAG
[ENA]
¡û
>WENV183447349
OMCS01005379
[OMCS] human gut metagenome; feces
3113
3196
+
Leu
GAG
[ENA]
¢þ
>WENV183653449
OQVZ01028786
[OQVZ] human gut metagenome; human gut
233
316
+
Leu
GAG
[ENA]
¢þ
>WENV170785289
MDSP01008866
[MDSP] gut metagenome; Stomach gut content
2169
2252
+
Leu
GAG
[ENA]
¢þ
>C181038058
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
879534
879615
+
Leu
GAG
-
¡û
>C191016982
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
689107
689188
+
Leu
GAG
-
¡û
>W09108418
ABTG01000002
Spirochaetota
Brachyspira murdochii DSM 12563 [ABTG]
180914
180995
+
Leu
GAG
[ENA]
¡û
>W1910000012
AFQM01000013
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
137766
137685
-
Leu
GAG
[ENA]
¡û
>W1910569126
JJMJ01000021
Spirochaetota
Brachyspira murdochii D13-03603F2 [JJMJ]
4017
4098
+
Leu
GAG
[ENA]
¡û
>W1910569219
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
1128327
1128246
-
Leu
GAG
[ENA]
¡û
>W1910574879
JQIU01000008
Spirochaetota
Brachyspira sp. G79 [JQIU]
1501087
1501168
+
Leu
GAG
[ENA]
¡û
>C09102329
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
1121273
1121354
+
Leu
GAG
[Ensembl]
¡û
>C10101938
CP001959
Spirochaetota
Brachyspira murdochii DSM 12563 [CP001959]
843326
843407
+
Leu
GAG
[Ensembl]
¡û
>C10101986
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
2312585
2312504
-
Leu
GAG
[Ensembl]
¡û
>C11103112
CP002874
Spirochaetota
Brachyspira intermedia PWS/A [CP002874]
2286222
2286303
+
Leu
GAG
[Ensembl]
¡û
>W1510641499
CVLB01000001
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
1947995
1948076
+
Leu
GAG
[ENA]
¡û
>W1511506951
JXNA01000073
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
100346
100427
+
Leu
GAG
[ENA]
¡û
>W1511506964
JXNB01000022
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
139175
139256
+
Leu
GAG
[ENA]
¡û
>W1511506998
JXNC01000016
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
98874
98955
+
Leu
GAG
[ENA]
¡û
>W1511507039
JXND01000030
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
100784
100865
+
Leu
GAG
[ENA]
¡û
>W1511507073
JXNE01000048
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
25431
25350
-
Leu
GAG
[ENA]
¡û
>W1511507095
JXNF01000025
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
98227
98308
+
Leu
GAG
[ENA]
¡û
>W1511507148
JXNG01000053
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
24958
24877
-
Leu
GAG
[ENA]
¡û
>W1511507157
JXNH01000025
Spirochaetota
Brachyspira hyodysenteriae G21 [JXNH]
97602
97683
+
Leu
GAG
[ENA]
¡û
>W1511507202
JXNI01000054
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
37481
37400
-
Leu
GAG
[ENA]
¡û
>W1511507236
JXNJ01000024
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
188873
188792
-
Leu
GAG
[ENA]
¡û
>W1511507261
JXNK01000025
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
1797
1716
-
Leu
GAG
[ENA]
¡û
>W1511507304
JXNL01000129
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
25593
25512
-
Leu
GAG
[ENA]
¡û
>W1511507335
JXNM01000104
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
54862
54943
+
Leu
GAG
[ENA]
¡û
>W1511507346
JXNN01000019
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
94293
94374
+
Leu
GAG
[ENA]
¡û
>W1511507380
JXNO01000014
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
114129
114048
-
Leu
GAG
[ENA]
¡û
>W1511507409
JXNP01000015
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
96755
96836
+
Leu
GAG
[ENA]
¡û
>W1511507444
JXNQ01000003
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
1877
1796
-
Leu
GAG
[ENA]
¡û
>W1511507496
JXNR01000076
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
98306
98387
+
Leu
GAG
[ENA]
¡û
>W1511507515
JXNS01000047
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
75872
75791
-
Leu
GAG
[ENA]
¡û
>C161092133
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
2601474
2601393
-
Leu
GAG
[Ensembl]
¡û
>C131001482
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
959621
959702
+
Leu
GAG
[Ensembl]
¡û
>C131003820
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
1779731
1779812
+
Leu
GAG
[Ensembl]
¡û
>C131019670
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
1090289
1090208
-
Leu
GAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK