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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96990 (113 seq.)
>W1711048722
LRPX01000052
Fusobacteriota
Fusobacterium equinum [LRPX]
12306
12390
+
Tyr
GTA
[ENA]
¡û
>W1711096454
LTHT01000126
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
51
135
+
Tyr
GTA
[ENA]
¡û
>W1711138536
LVDY01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDY]
47321
47405
+
Tyr
GTA
[ENA]
¡û
>W1711138589
LVDZ01000007
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
47412
47496
+
Tyr
GTA
[ENA]
¡û
>W1711138638
LVEA01000024
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEA]
231
147
-
Tyr
GTA
[ENA]
¡û
>W1711139074
LVEQ01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
58466
58550
+
Tyr
GTA
[ENA]
¡û
>W1711139113
LVER01000012
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
42890
42974
+
Tyr
GTA
[ENA]
¡û
>W1711139174
LVES01000002
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
58466
58550
+
Tyr
GTA
[ENA]
¡û
>W1711139208
LVET01000007
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
231
147
-
Tyr
GTA
[ENA]
¡û
>W1711139255
LVEU01000006
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEU]
231
147
-
Tyr
GTA
[ENA]
¡û
>W1711139298
LVEV01000007
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEV]
47595
47679
+
Tyr
GTA
[ENA]
¡û
>W1711139345
LVEW01000013
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEW]
12482
12566
+
Tyr
GTA
[ENA]
¡û
>W1711139378
LVEX01000007
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEX]
47595
47679
+
Tyr
GTA
[ENA]
¡û
>W1711139425
LVEY01000017
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
12347
12431
+
Tyr
GTA
[ENA]
¡û
>W1711139461
LVEZ01000005
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEZ]
47322
47406
+
Tyr
GTA
[ENA]
¡û
>W1711139505
LVFA01000010
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFA]
231
147
-
Tyr
GTA
[ENA]
¡û
>W1711139536
LVFB01000006
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFB]
47241
47325
+
Tyr
GTA
[ENA]
¡û
>W1711139584
LVFC01000012
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
427448
427364
-
Tyr
GTA
[ENA]
¡û
>W1711139634
LVFD01000005
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFD]
231
147
-
Tyr
GTA
[ENA]
¡û
>W1711139680
LVFE01000006
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFE]
47616
47700
+
Tyr
GTA
[ENA]
¡û
>W131179446
ARMK01000021
Fusobacteriota
Fusobacterium russii ATCC 25533 [ARMK]
1288
1372
+
Tyr
GTA
[ENA]
¡û
>W141054953
AOJP01000014
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AOJP]
1196
1112
-
Tyr
GTA
[ENA]
¡û
>WENV180773395
ODIJ01000158
[ODIJ] human metagenome; G_DNA_Tongue dorsum
16538
16622
+
Tyr
GTA
[ENA]
¢þ
>WENV180782969
ODIQ01000577
[ODIQ] human metagenome; G_DNA_Tongue dorsum
175
259
+
Tyr
GTA
[ENA]
¢þ
>WENV180819500
ODJR01000147
[ODJR] human metagenome; G_DNA_Tongue dorsum
64117
64201
+
Tyr
GTA
[ENA]
¢þ
>WENV180852818
ODKW01006952
[ODKW] human metagenome; G_DNA_Tongue dorsum
176
260
+
Tyr
GTA
[ENA]
¢þ
>WENV180897941
ODNI01140355
[ODNI] human metagenome; G_DNA_Tongue dorsum
110
26
-
Tyr
GTA
[ENA]
¢þ
>WENV181057745
ODYL01000917
[ODYL] human metagenome; G_DNA_Tongue dorsum
18564
18480
-
Tyr
GTA
[ENA]
¢þ
>WENV181066555
ODZI01000209
[ODZI] human metagenome; G_DNA_Supragingival plaque
27317
27233
-
Tyr
GTA
[ENA]
¢þ
>WENV181073879
OEAO01001502
[OEAO] human metagenome; G_DNA_Tongue dorsum
2289
2373
+
Tyr
GTA
[ENA]
¢þ
>WENV181084666
OEAX01000007
[OEAX] human metagenome; G_DNA_Tongue dorsum
32249
32165
-
Tyr
GTA
[ENA]
¢þ
>WENV181112260
OEEL01000313
[OEEL] human metagenome; G_DNA_Tongue dorsum
17234
17318
+
Tyr
GTA
[ENA]
¢þ
>WENV181364004
OFOU01009035
[OFOU] human gut metagenome; human gut
266
182
-
Tyr
GTA
[ENA]
¢þ
>WENV181428502
OGCV01003433
[OGCV] metagenome; Human gut stool
3016
3100
+
Tyr
GTA
[ENA]
¢þ
>WENV181453366
OGEB01004417
[OGEB] metagenome; Human gut stool
2815
2731
-
Tyr
GTA
[ENA]
¢þ
>WENV181467354
OGER01002665
[OGER] metagenome; Human gut stool
9546
9630
+
Tyr
GTA
[ENA]
¢þ
>WENV181507750
OGGP01000801
[OGGP] metagenome; Human gut stool
266
182
-
Tyr
GTA
[ENA]
¢þ
>WENV181518307
OGHA01007137
[OGHA] metagenome; Human gut stool
267
183
-
Tyr
GTA
[ENA]
¢þ
>WENV181537417
OGHW01011508
[OGHW] metagenome; Human gut stool
1606
1522
-
Tyr
GTA
[ENA]
¢þ
>WENV181539901
OGIA01000889
[OGIA] metagenome; Human gut stool
13958
13874
-
Tyr
GTA
[ENA]
¢þ
>WENV181561184
OGJD01000364
[OGJD] metagenome; Human gut stool
1742
1658
-
Tyr
GTA
[ENA]
¢þ
>WENV181627558
OGMN01001478
[OGMN] metagenome; Human gut stool
17156
17072
-
Tyr
GTA
[ENA]
¢þ
>WENV181794834
OGRS01003190
[OGRS] human gut metagenome; faeces
266
182
-
Tyr
GTA
[ENA]
¢þ
>WENV181959405
OGZM01007877
[OGZM] human gut metagenome; faeces
332
248
-
Tyr
GTA
[ENA]
¢þ
>WENV181959977
OGZN01007802
[OGZN] human gut metagenome; faeces
3393
3309
-
Tyr
GTA
[ENA]
¢þ
>WENV182008031
OHBI01009331
[OHBI] human gut metagenome; feces
1455
1371
-
Tyr
GTA
[ENA]
¢þ
>WENV182015636
OHBR01007981
[OHBR] human gut metagenome; feces
564
648
+
Tyr
GTA
[ENA]
¢þ
>WENV182499735
OITV01000110
[OITV] human gut metagenome; human gut
1444
1360
-
Tyr
GTA
[ENA]
¢þ
>WENV182504272
OIUT01002008
[OIUT] human gut metagenome; human gut
73
157
+
Tyr
GTA
[ENA]
¢þ
>W141273962
JAAC01000138
Fusobacteriota
Fusobacterium necrophorum BL [JAAC]
229
145
-
Tyr
GTA
[ENA]
¡û
>W141273995
JAAD01000222
Fusobacteriota
Fusobacterium necrophorum DJ-1 [JAAD]
2064
2148
+
Tyr
GTA
[ENA]
¡û
>W141274032
JAAE01000297
Fusobacteriota
Fusobacterium necrophorum BFTR-1 [JAAE]
2070
2154
+
Tyr
GTA
[ENA]
¡û
>W141274065
JAAG01000095
Fusobacteriota
Fusobacterium necrophorum BFTR-2 [JAAG]
207
123
-
Tyr
GTA
[ENA]
¡û
>W141274090
JAAH01000038
Fusobacteriota
Fusobacterium necrophorum DJ-2 [JAAH]
2103
2187
+
Tyr
GTA
[ENA]
¡û
>WENV182892233
OKSH01038475
[OKSH] human gut metagenome; faeces
573
657
+
Tyr
GTA
[ENA]
¢þ
>WENV182905144
OKTB01004030
[OKTB] human gut metagenome; feces
948
1032
+
Tyr
GTA
[ENA]
¢þ
>WENV183017562
OLEW01000017
[OLEW] human gut metagenome; human gut
4703
4619
-
Tyr
GTA
[ENA]
¢þ
>WENV183115254
OLNQ01006041
[OLNQ] human gut metagenome; faeces
3600
3684
+
Tyr
GTA
[ENA]
¢þ
>WENV183714972
PDWI01214122
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
222
138
-
Tyr
GTA
[ENA]
¢þ
>WENV183760775
PPYE01237012
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
3414
3498
+
Tyr
GTA
[ENA]
¢þ
>WENV183764058
PPYE01312926
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
272
188
-
Tyr
GTA
[ENA]
¢þ
>WENV183780633
PPYF01173417
[PPYF] human gut metagenome; stool from patient with Crohn's disease
4944
5028
+
Tyr
GTA
[ENA]
¢þ
>WENV170653323
JRYI01068926
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
122
206
+
Tyr
GTA
[ENA]
¢þ
>W09109792
ABUO01000012
Fusobacteriota
Sebaldella termitidis ATCC 33386 [ABUO]
51875
51791
-
Tyr
GTA
[ENA]
¡û
>W09118628
ACDD01000063
Fusobacteriota
Fusobacterium gonidiaformans 3_1_5R [ACDD]
404
320
-
Tyr
GTA
[ENA]
¡û
>W09118745
ACDG01000025
Fusobacteriota
Fusobacterium necrophorum D12 [ACDG]
9529
9613
+
Tyr
GTA
[ENA]
¡û
>W09118816
ACDH01000078
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
38782
38866
+
Tyr
GTA
[ENA]
¡û
>W09120634
ACET01000021
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [ACET]
12521
12605
+
Tyr
GTA
[ENA]
¡û
>W09125157
ACIE01000003
Fusobacteriota
Fusobacterium varium ATCC 27725 [ACIE]
191
107
-
Tyr
GTA
[ENA]
¡û
>C181161044
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
1448716
1448800
+
Tyr
GTA
-
¡û
>C181161138
CP028106
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [CP028106]
206411
206327
-
Tyr
GTA
-
¡û
>C181161171
CP028107
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [CP028107]
387032
387116
+
Tyr
GTA
-
¡û
>C181216768
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
3436773
3436857
+
Tyr
GTA
-
¡û
>C191015359
CP018196
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1291 [CP018196]
79593
79677
+
Tyr
GTA
-
¡û
>C191016031
CP019306
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1260 [CP019306]
86181
86265
+
Tyr
GTA
-
¡û
>C191113380
CP033837
Fusobacteriota
Fusobacterium necrophorum FDAARGOS_565 [CP033837]
1082387
1082303
-
Tyr
GTA
-
¡û
>C191132410
CP034842
Fusobacteriota
Fusobacterium necrophorum subsp. necrophorum ATCC 25286 [CP034842]
477575
477659
+
Tyr
GTA
-
¡û
>C191219271
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
3394724
3394808
+
Tyr
GTA
-
¡û
>W1910194453
FAUS01000008
Fusobacteriota
Fusobacterium sp. [FAUS]
1321978
1322062
+
Tyr
GTA
[ENA]
¡û
>W1911160157
NPNE01000024
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme P1_LM [NPNE]
251
167
-
Tyr
GTA
[ENA]
¡û
>W1911160174
NPNF01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme P1_CP [NPNF]
249194
249110
-
Tyr
GTA
[ENA]
¡û
>W1810791366
QRIG01000031
Fusobacteriota
Fusobacterium varium AM22-17 [QRIG]
244
160
-
Tyr
GTA
[ENA]
¡û
>W1810818409
QSDE01000028
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
39970
40054
+
Tyr
GTA
[ENA]
¡û
>W1810832242
QSOW01000033
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
244
160
-
Tyr
GTA
[ENA]
¡û
>C10112701
CP001739
Fusobacteriota
Sebaldella termitidis ATCC 33386 [CP001739]
2957665
2957581
-
Tyr
GTA
[Ensembl]
¡û
>W1610026591
AUZI01000032
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AUZI]
175
91
-
Tyr
GTA
[ENA]
¡û
>W121001930
ADLZ01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [ADLZ]
604
520
-
Tyr
GTA
[ENA]
¡û
>W121021781
AGWJ01000067
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
571
487
-
Tyr
GTA
[ENA]
¡û
>W121067009
AJSY01000042
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme ATCC 51357 [AJSY]
176
92
-
Tyr
GTA
[ENA]
¡û
>W1610889851
LRPX01000052
Fusobacteriota
Fusobacterium equinum [LRPX]
12306
12390
+
Tyr
GTA
[ENA]
¡û
>W1610949576
LVDY01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDY]
47321
47405
+
Tyr
GTA
[ENA]
¡û
>W1610949629
LVDZ01000007
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
47412
47496
+
Tyr
GTA
[ENA]
¡û
>W1610949678
LVEA01000024
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEA]
231
147
-
Tyr
GTA
[ENA]
¡û
>W1610950082
LVEQ01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
58466
58550
+
Tyr
GTA
[ENA]
¡û
>W1610950121
LVER01000012
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
42890
42974
+
Tyr
GTA
[ENA]
¡û
>W1610950182
LVES01000002
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
58466
58550
+
Tyr
GTA
[ENA]
¡û
>W1610950216
LVET01000007
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
231
147
-
Tyr
GTA
[ENA]
¡û
>W1610950263
LVEU01000006
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEU]
231
147
-
Tyr
GTA
[ENA]
¡û
>W1610950306
LVEV01000007
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEV]
47595
47679
+
Tyr
GTA
[ENA]
¡û
>W1610950353
LVEW01000013
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEW]
12482
12566
+
Tyr
GTA
[ENA]
¡û
>W1610950386
LVEX01000007
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEX]
47595
47679
+
Tyr
GTA
[ENA]
¡û
>W1610950433
LVEY01000017
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
12347
12431
+
Tyr
GTA
[ENA]
¡û
>W1610950469
LVEZ01000005
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEZ]
47322
47406
+
Tyr
GTA
[ENA]
¡û
>W1610950513
LVFA01000010
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFA]
231
147
-
Tyr
GTA
[ENA]
¡û
>W1610950544
LVFB01000006
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFB]
47241
47325
+
Tyr
GTA
[ENA]
¡û
>W1610950592
LVFC01000012
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
427448
427364
-
Tyr
GTA
[ENA]
¡û
>W1610950642
LVFD01000005
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFD]
231
147
-
Tyr
GTA
[ENA]
¡û
>W1610950688
LVFE01000006
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFE]
47616
47700
+
Tyr
GTA
[ENA]
¡û
>W1710022640
AUZI01000032
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AUZI]
175
91
-
Tyr
GTA
[ENA]
¡û
>W1710510387
FMXX01000020
Fusobacteriota
Fusobacterium necrophorum [FMXX]
802
718
-
Tyr
GTA
[ENA]
¡û
>W1710600944
FUWX01000006
Fusobacteriota
Cetobacterium ceti [FUWX]
178997
179081
+
Tyr
GTA
[ENA]
¡û
>W1710600948
FUWX01000006
Fusobacteriota
Cetobacterium ceti [FUWX]
161400
161316
-
Tyr
GTA
[ENA]
¡û
>W1710600983
FUWX01000012
Fusobacteriota
Cetobacterium ceti [FUWX]
842
758
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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