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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96994 (30 seq.)
>W1711129953
LUUM01000246
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
78113
78197
+
Leu
TAG
[ENA]
¡û
>W1711228832
LXWX01000013
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
4937
4853
-
Leu
TAG
[ENA]
¡û
>W1711573727
MNDV01000013
Alphaproteobacteria
Alphaproteobacteria bacterium 13_2_20CM_2_64_7 [MNDV]
3046
2962
-
Leu
TAG
[ENA]
¡û
>C171101476
CP019948
Alphaproteobacteria
Methylocystis bryophila S285 [CP019948]
2592025
2592109
+
Leu
TAG
-
¡û
>W131163859
ARAB01000008
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
286657
286573
-
Leu
TAG
[ENA]
¡û
>w015402
AAPC01000004
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [AAPC]
268535
268619
+
Leu
TAG
[ENA]
¡û
>WENV180298775
OBJA01600573
[OBJA] soil metagenome; sediment, water from around vicinity
122
206
+
Leu
TAG
[ENA]
¢þ
>WENV180304106
OBJH01039886
[OBJH] soil metagenome; soil
123
39
-
Leu
TAG
[ENA]
¢þ
>WENV180308799
OBJR01213798
[OBJR] soil metagenome; soil
111
27
-
Leu
TAG
[ENA]
¢þ
>WENV180331427
OBLA01043869
[OBLA] soil metagenome; Alaskan Permafrost
176
92
-
Leu
TAG
[ENA]
¢þ
>WENV181165789
OEIS01179323
[OEIS] soil metagenome; soil
137
221
+
Leu
TAG
[ENA]
¢þ
>WENV181167048
OEIU01007201
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
3174
3090
-
Leu
TAG
[ENA]
¢þ
>W141151381
AXBA01000016
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
92941
92857
-
Leu
TAG
[ENA]
¡û
>W141216027
AZUO01000001
Alphaproteobacteria
Methylosinus sp. LW3 [AZUO]
2324865
2324949
+
Leu
TAG
[ENA]
¡û
>C08011446
CP000781
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [CP000781]
4013682
4013766
+
Leu
TAG
[Ensembl]
¡û
>C08000300
AP009384
Alphaproteobacteria
Azorhizobium caulinodans ORS 571 [AP009384]
1833437
1833521
+
Leu
TAG
[Ensembl]
¡û
>W141278477
JAFO01000001
Alphaproteobacteria
Xanthobacter sp. 126 [JAFO]
2375389
2375473
+
Leu
TAG
[ENA]
¡û
>WENV170002753
AGTN01119026
[AGTN] bioreactor metagenome; poplar biomass
57
141
+
Leu
TAG
[ENA]
¢þ
>WENV170709055
LNFM01000084
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
75071
74987
-
Leu
TAG
[ENA]
¢þ
>C181089634
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
4408001
4407917
-
Leu
TAG
-
¡û
>W141564365
JIAS01000003
Alphaproteobacteria
Dongia sp. URHE0060 [JIAS]
137737
137821
+
Leu
TAG
[ENA]
¡û
>W141701390
JMKQ01000006
Alphaproteobacteria
Methylocystis sp. LW5 [JMKQ]
714403
714487
+
Leu
TAG
[ENA]
¡û
>W141730075
JNIB01000001
Alphaproteobacteria
Xanthobacter sp. 91 [JNIB]
4977016
4976932
-
Leu
TAG
[ENA]
¡û
>W141821196
JQNK01000002
Alphaproteobacteria
Methylosinus sp. PW1 [JQNK]
308747
308663
-
Leu
TAG
[ENA]
¡û
>W1810330584
PUIV01000046
Alphaproteobacteria
Methylosinus sporium DSM 17706 [PUIV]
10850
10766
-
Leu
TAG
[ENA]
¡û
>W10118828
ADVE01000020
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
19969
20053
+
Leu
TAG
[ENA]
¡û
>W11125000
ADVE01000020
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
19969
20053
+
Leu
TAG
[ENA]
¡û
>C161016822
CP007440
Alphaproteobacteria
Rhodoplanes sp. Z2-YC6860 [CP007440]
4461738
4461822
+
Leu
TAG
[Ensembl]
¡û
>W1610941026
LUUM01000246
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
78113
78197
+
Leu
TAG
[ENA]
¡û
>W1611012749
LXWX01000013
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
4937
4853
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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