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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.97145 (115 seq.)
>W1710785360
LJHU01000023
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
28085
28169
+
Leu
TAG
[ENA]
¡û
>W1710860193
LMCR01000016
Alphaproteobacteria
Devosia sp. Root105 [LMCR]
230929
230845
-
Leu
TAG
[ENA]
¡û
>W1710861893
LMDZ01000004
Alphaproteobacteria
Phenylobacterium sp. Root1277 [LMDZ]
218113
218197
+
Leu
TAG
[ENA]
¡û
>W1710861968
LMEA01000011
Alphaproteobacteria
Devosia sp. Root413D1 [LMEA]
10508
10424
-
Leu
TAG
[ENA]
¡û
>W1710861986
LMEB01000004
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
326717
326801
+
Leu
TAG
[ENA]
¡û
>W1710862164
LMEE01000001
Alphaproteobacteria
Phenylobacterium sp. Root1290 [LMEE]
269270
269354
+
Leu
TAG
[ENA]
¡û
>W1710862566
LMEM01000001
Alphaproteobacteria
Devosia sp. Root436 [LMEM]
404896
404812
-
Leu
TAG
[ENA]
¡û
>W1710863880
LMFL01000045
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
31803
31887
+
Leu
TAG
[ENA]
¡û
>W1710865852
LMGZ01000021
Alphaproteobacteria
Devosia sp. Root635 [LMGZ]
69109
69025
-
Leu
TAG
[ENA]
¡û
>W1710866784
LMHT01000022
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
308273
308189
-
Leu
TAG
[ENA]
¡û
>W1710867674
LMIM01000001
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
187949
188033
+
Leu
TAG
[ENA]
¡û
>W1711166959
LVVY01000065
Alphaproteobacteria
Devosia elaeis S37 [LVVY]
33090
33006
-
Leu
TAG
[ENA]
¡û
>W1711385191
MEDU01000205
Alphaproteobacteria
Devosia sp. SCN 66-27 [MEDU]
327
243
-
Leu
TAG
[ENA]
¡û
>W1711385854
MEET01000004
Alphaproteobacteria
Pelagibacterium sp. SCN 63-126 [MEET]
231497
231581
+
Leu
TAG
[ENA]
¡û
>W1711386006
MEEV01000017
Alphaproteobacteria
Pelagibacterium sp. SCN 64-44 [MEEV]
85507
85423
-
Leu
TAG
[ENA]
¡û
>W1711386053
MEEV01000062
Alphaproteobacteria
Pelagibacterium sp. SCN 64-44 [MEEV]
28975
29059
+
Leu
TAG
[ENA]
¡û
>W1711387092
MEGG01000039
Alphaproteobacteria
Pelagibacterium sp. SCN 63-17 [MEGG]
6173
6257
+
Leu
TAG
[ENA]
¡û
>W1711504820
MKUY01000003
Alphaproteobacteria
Devosia sp. 63-57 [MKUY]
231509
231593
+
Leu
TAG
[ENA]
¡û
>W1711504955
MKVB01000001
Alphaproteobacteria
Devosia sp. 66-14 [MKVB]
470330
470246
-
Leu
TAG
[ENA]
¡û
>W131221579
AUAO01000007
Alphaproteobacteria
Brevundimonas aveniformis DSM 17977 [AUAO]
2217
2133
-
Leu
TAG
[ENA]
¡û
>WENV180016328
FSUR01000068
[FSUR] metagenome; soil
4462
4546
+
Leu
TAG
[ENA]
¢þ
>WENV180016435
FSUX01001562
[FSUX] metagenome; soil
207
123
-
Leu
TAG
[ENA]
¢þ
>WENV180017429
FSWZ01000315
[FSWZ] metagenome; soil
139
55
-
Leu
TAG
[ENA]
¢þ
>WENV180018782
FTAI01001562
[FTAI] metagenome; soil
5873
5957
+
Leu
TAG
[ENA]
¢þ
>WENV180020083
FTCV01001594
[FTCV] metagenome; soil
15159
15243
+
Leu
TAG
[ENA]
¢þ
>WENV180020740
FTDB01000777
[FTDB] metagenome; soil
9
93
+
Leu
TAG
[ENA]
¢þ
>WENV180020857
FTDD01000114
[FTDD] metagenome; soil
4441
4525
+
Leu
TAG
[ENA]
¢þ
>WENV180021584
FTES01000450
[FTES] metagenome; soil
2361
2445
+
Leu
TAG
[ENA]
¢þ
>WENV180022021
FTFJ01000760
[FTFJ] metagenome; soil
176
92
-
Leu
TAG
[ENA]
¢þ
>WENV180022925
FTHA01001183
[FTHA] metagenome; soil
8025
8109
+
Leu
TAG
[ENA]
¢þ
>WENV180028066
FTIZ01650756
[FTIZ] metagenome; soil
1174
1258
+
Leu
TAG
[ENA]
¢þ
>WENV180028150
FTJA01000297
[FTJA] metagenome; soil
4079
3995
-
Leu
TAG
[ENA]
¢þ
>WENV180028151
FTJA01000297
[FTJA] metagenome; soil
3582
3498
-
Leu
TAG
[ENA]
¢þ
>WENV180028526
FTJE01001394
[FTJE] metagenome; soil
8144
8060
-
Leu
TAG
[ENA]
¢þ
>WENV180030430
FTJM01015450
[FTJM] metagenome; soil
89
5
-
Leu
TAG
[ENA]
¢þ
>WENV180031362
FTJO01033435
[FTJO] metagenome; soil
242
158
-
Leu
TAG
[ENA]
¢þ
>WENV180031975
FTJU01002276
[FTJU] metagenome; soil
9516
9600
+
Leu
TAG
[ENA]
¢þ
>WENV180033968
FTKM01015983
[FTKM] metagenome; soil
1560
1476
-
Leu
TAG
[ENA]
¢þ
>WENV180033969
FTKM01016181
[FTKM] metagenome; soil
32745
32829
+
Leu
TAG
[ENA]
¢þ
>WENV180035081
FTKT01000980
[FTKT] metagenome; soil
4157
4241
+
Leu
TAG
[ENA]
¢þ
>WENV180035464
FTKZ01020832
[FTKZ] metagenome; soil
132
216
+
Leu
TAG
[ENA]
¢þ
>W141066782
ARYH01000002
Alphaproteobacteria
Hyphomonas adhaerens MHS-3 [ARYH]
67738
67822
+
Leu
TAG
[ENA]
¡û
>WENV180694151
OCZS012016654
[OCZS] soil metagenome; soil
91
175
+
Leu
TAG
[ENA]
¢þ
>WENV181170564
OEIV010059087
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
277
193
-
Leu
TAG
[ENA]
¢þ
>WENV181227456
OFDN01010992
[OFDN] hot springs metagenome; Water
577
493
-
Leu
TAG
[ENA]
¢þ
>WENV181378438
OFRB01004801
[OFRB] wastewater metagenome; Exp Tend CN 0WW
482
566
+
Leu
TAG
[ENA]
¢þ
>WENV182543979
OJBD01005359
[OJBD] seawater metagenome; Sea water
515
431
-
Leu
TAG
[ENA]
¢þ
>WENV183697310
OUNJ010336899
[OUNJ] metagenome; soil
3083
2999
-
Leu
TAG
[ENA]
¢þ
>WENV183726031
PJQF01063500
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
310
394
+
Leu
TAG
[ENA]
¢þ
>WENV183728659
PJTQ01000253
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
35103
35187
+
Leu
TAG
[ENA]
¢þ
>WENV183729561
PJTQ01069417
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
395
311
-
Leu
TAG
[ENA]
¢þ
>WENV183729961
PJTR01000243
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
1421
1337
-
Leu
TAG
[ENA]
¢þ
>WENV183731503
PJTT01000012
[PJTT] soil metagenome; Soil (2) enriched on wood chips
138987
139071
+
Leu
TAG
[ENA]
¢þ
>WENV183732749
PJTX01010160
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
662
746
+
Leu
TAG
[ENA]
¢þ
>WENV183734143
PJTZ01000090
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
74614
74530
-
Leu
TAG
[ENA]
¢þ
>WENV183736975
PJUD01000153
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
5912
5996
+
Leu
TAG
[ENA]
¢þ
>WENV183739943
PJUF01000086
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
77181
77097
-
Leu
TAG
[ENA]
¢þ
>WENV183743651
PJUJ01014394
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
646
730
+
Leu
TAG
[ENA]
¢þ
>WENV183743658
PJUJ01015427
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
720
636
-
Leu
TAG
[ENA]
¢þ
>WENV183743700
PJUJ01025530
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
331
415
+
Leu
TAG
[ENA]
¢þ
>WENV183745086
PJUL01002146
[PJUL] feces metagenome; Chicken feces enriched on filter paper
2684
2768
+
Leu
TAG
[ENA]
¢þ
>WENV183745192
PJUL01005005
[PJUL] feces metagenome; Chicken feces enriched on filter paper
1492
1576
+
Leu
TAG
[ENA]
¢þ
>WENV170121479
CENM01030386
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
491
575
+
Leu
TAG
[ENA]
¢þ
>WENV170201024
CEPP01049160
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
349
265
-
Leu
TAG
[ENA]
¢þ
>WENV170305413
CESI01143901
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
13
97
+
Leu
TAG
[ENA]
¢þ
>WENV170574554
FLYM01058408
[FLYM] hot springs metagenome; Sediment
315
399
+
Leu
TAG
[ENA]
¢þ
>WENV170706185
LNAP01001560
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1209
1125
-
Leu
TAG
[ENA]
¢þ
>WENV170829124
MDSZ01003262
[MDSZ] marine metagenome; seawater
69159
69075
-
Leu
TAG
[ENA]
¢þ
>WENV170922401
MDTG01030462
[MDTG] marine metagenome; seawater
3846
3762
-
Leu
TAG
[ENA]
¢þ
>WENV170963435
MRWG01000183
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
66647
66731
+
Leu
TAG
[ENA]
¢þ
>C181139135
CP026747
Alphaproteobacteria
Devosia sp. I507 [CP026747]
3738131
3738215
+
Leu
TAG
-
¡û
>C191130654
CP034767
Alphaproteobacteria
Devosia sp. 1566 [CP034767]
1568648
1568732
+
Leu
TAG
-
¡û
>C191159632
CP038440
Alphaproteobacteria
Brevundimonas sp. MF30-B [CP038440]
1621207
1621123
-
Leu
TAG
-
¡û
>C191189144
CP041243
Alphaproteobacteria
Brevundimonas sp. M20 [CP041243]
1640031
1639947
-
Leu
TAG
-
¡û
>W141739278
JNNO01000001
Alphaproteobacteria
Devosia sp. LC5 [JNNO]
22837
22921
+
Leu
TAG
[ENA]
¡û
>W1910725244
MGLK01000003
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_70_19 [MGLK]
278197
278113
-
Leu
TAG
[ENA]
¡û
>W1911696609
QMEL01000005
Alphaproteobacteria
Pelagibacterium sediminicola IMCC34151 [QMEL]
20604
20520
-
Leu
TAG
[ENA]
¡û
>W1911737840
QTTA01000010
Alphaproteobacteria
Brevundimonas halotolerans MCS24 [QTTA]
425237
425321
+
Leu
TAG
[ENA]
¡û
>W1911738153
QUOQ01000003
Alphaproteobacteria
Brevundimonas lutea NS26 [QUOQ]
236552
236468
-
Leu
TAG
[ENA]
¡û
>W1810000948
BEWU01000003
Alphaproteobacteria
Brevundimonas denitrificans TAR-002 [BEWU]
164906
164990
+
Leu
TAG
[ENA]
¡û
>W1810426026
PYVW01000001
Alphaproteobacteria
Devosia naphthalenivorans CM5-1 [PYVW]
244430
244514
+
Leu
TAG
[ENA]
¡û
>W1810426200
PYVZ01000006
Alphaproteobacteria
Devosia indica IO390501 [PYVZ]
79834
79918
+
Leu
TAG
[ENA]
¡û
>W1810426318
PYWB01000011
Alphaproteobacteria
Devosia submarina JCM 18935 [PYWB]
92654
92738
+
Leu
TAG
[ENA]
¡û
>W1810576920
QENV01000008
Alphaproteobacteria
Devosia sp. PTEAB7WZ [QENV]
146469
146553
+
Leu
TAG
[ENA]
¡û
>W1810779228
QQNH01000007
Alphaproteobacteria
Pelagibacterium lacus XYN52 [QQNH]
87164
87248
+
Leu
TAG
[ENA]
¡û
>C151079194
CP011300
Alphaproteobacteria
Devosia sp. H5989 [CP011300]
1507269
1507185
-
Leu
TAG
[Ensembl]
¡û
>W1511489462
JWSY01000008
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
4934
5018
+
Leu
TAG
[ENA]
¡û
>W1511541954
JZEX01000157
Alphaproteobacteria
Devosia geojensis BD-c194 [JZEX]
15117
15201
+
Leu
TAG
[ENA]
¡û
>W1511541969
JZEY01000054
Alphaproteobacteria
Devosia chinhatensis IPL18 [JZEY]
1470521
1470605
+
Leu
TAG
[ENA]
¡û
>W1511568585
LAJE01000089
Alphaproteobacteria
Devosia insulae DS-56 [LAJE]
63536
63452
-
Leu
TAG
[ENA]
¡û
>W1511568618
LAJF01000091
Alphaproteobacteria
Devosia limi DSM 17137 [LAJF]
78754
78838
+
Leu
TAG
[ENA]
¡û
>W1511573957
LANJ01000012
Alphaproteobacteria
Devosia epidermidihirudinis E84 [LANJ]
63540
63456
-
Leu
TAG
[ENA]
¡û
>W1511576817
LAPV01000228
Alphaproteobacteria
Devosia psychrophila Cr7-05 [LAPV]
60148
60232
+
Leu
TAG
[ENA]
¡û
>C121005259
CP003075
Alphaproteobacteria
Pelagibacterium halotolerans B2 [CP003075]
1496979
1496895
-
Leu
TAG
[Ensembl]
¡û
>C161047042
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
2260415
2260499
+
Leu
TAG
[Ensembl]
¡û
>C161047969
CP012945
Alphaproteobacteria
Devosia sp. A16 [CP012945]
4756975
4756891
-
Leu
TAG
-
¡û
>W1610649166
LJHU01000023
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
28085
28169
+
Leu
TAG
[ENA]
¡û
>W1610722539
LMCR01000016
Alphaproteobacteria
Devosia sp. Root105 [LMCR]
230929
230845
-
Leu
TAG
[ENA]
¡û
>W1610724239
LMDZ01000004
Alphaproteobacteria
Phenylobacterium sp. Root1277 [LMDZ]
218113
218197
+
Leu
TAG
[ENA]
¡û
>W1610724314
LMEA01000011
Alphaproteobacteria
Devosia sp. Root413D1 [LMEA]
10508
10424
-
Leu
TAG
[ENA]
¡û
>W1610724332
LMEB01000004
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
326717
326801
+
Leu
TAG
[ENA]
¡û
>W1610724510
LMEE01000001
Alphaproteobacteria
Phenylobacterium sp. Root1290 [LMEE]
269270
269354
+
Leu
TAG
[ENA]
¡û
>W1610724912
LMEM01000001
Alphaproteobacteria
Devosia sp. Root436 [LMEM]
404896
404812
-
Leu
TAG
[ENA]
¡û
>W1610726226
LMFL01000045
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
31803
31887
+
Leu
TAG
[ENA]
¡û
>W1610728198
LMGZ01000021
Alphaproteobacteria
Devosia sp. Root635 [LMGZ]
69109
69025
-
Leu
TAG
[ENA]
¡û
>W1610729130
LMHT01000022
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
308273
308189
-
Leu
TAG
[ENA]
¡û
>W1610730020
LMIM01000001
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
187949
188033
+
Leu
TAG
[ENA]
¡û
>W1610977499
LVVY01000065
Alphaproteobacteria
Devosia elaeis S37 [LVVY]
33090
33006
-
Leu
TAG
[ENA]
¡û
>W1710084598
BDMM01000001
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
153590
153674
+
Leu
TAG
[ENA]
¡û
>W1710516656
FNCS01000005
Alphaproteobacteria
Pelagibacterium luteolum [FNCS]
143240
143156
-
Leu
TAG
[ENA]
¡û
>W1710533662
FNRH01000002
Alphaproteobacteria
Pelagibacterium halotolerans H642 [FNRH]
152833
152749
-
Leu
TAG
[ENA]
¡û
>W1710550648
FOFL01000004
Alphaproteobacteria
Devosia sp. YR412 [FOFL]
90732
90648
-
Leu
TAG
[ENA]
¡û
>W1710558664
FOMB01000008
Alphaproteobacteria
Devosia psychrophila [FOMB]
5212
5128
-
Leu
TAG
[ENA]
¡û
>W1710576179
FOZV01000002
Alphaproteobacteria
Brevundimonas viscosa [FOZV]
263484
263400
-
Leu
TAG
[ENA]
¡û
>W1710582165
FPKU01000001
Alphaproteobacteria
Devosia enhydra [FPKU]
1208888
1208804
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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