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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.97609 (85 seq.)
>W1711185398
LWNI01000101
Betaproteobacteria
Neisseria sp. HMSC31F04 [LWNI]
26718
26634
-
Leu
CAA
[ENA]
¡û
>W131161563
AQXU01000021
Betaproteobacteria
Leeia oryzae DSM 17879 [AQXU]
56823
56907
+
Leu
CAA
[ENA]
¡û
>W141042653
AMER01000032
Betaproteobacteria
Neisseria sp. oral taxon 020 oral taxon 020 str. F0370 [AMER]
18030
18114
+
Leu
CAA
[ENA]
¡û
>WENV180697489
ODDE01000881
[ODDE] human metagenome; G_DNA_Supragingival plaque
549
465
-
Leu
CAA
[ENA]
¢þ
>WENV180727721
ODGU01010686
[ODGU] human metagenome; G_DNA_Supragingival plaque
271
187
-
Leu
CAA
[ENA]
¢þ
>WENV180733259
ODGY01086613
[ODGY] human metagenome; G_DNA_Supragingival plaque
115
199
+
Leu
CAA
[ENA]
¢þ
>WENV180735099
ODGZ01064541
[ODGZ] human metagenome; G_DNA_Supragingival plaque
305
389
+
Leu
CAA
[ENA]
¢þ
>WENV180736175
ODHB01008265
[ODHB] human metagenome; G_DNA_Supragingival plaque
1769
1853
+
Leu
CAA
[ENA]
¢þ
>WENV180738841
ODHD01000773
[ODHD] human metagenome; G_DNA_Supragingival plaque
319
235
-
Leu
CAA
[ENA]
¢þ
>WENV180750862
ODHS01010567
[ODHS] human metagenome; G_DNA_Supragingival plaque
134
50
-
Leu
CAA
[ENA]
¢þ
>WENV180765032
ODIB01013230
[ODIB] human metagenome; G_DNA_Supragingival plaque
246
330
+
Leu
CAA
[ENA]
¢þ
>WENV180765500
ODIC01000009
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
97728
97812
+
Leu
CAA
[ENA]
¢þ
>WENV180787278
ODIS01003167
[ODIS] human metagenome; G_DNA_Supragingival plaque
235
151
-
Leu
CAA
[ENA]
¢þ
>WENV180795853
ODJB01000419
[ODJB] human metagenome; G_DNA_Supragingival plaque
27587
27671
+
Leu
CAA
[ENA]
¢þ
>WENV180796426
ODJB01004715
[ODJB] human metagenome; G_DNA_Supragingival plaque
46
130
+
Leu
CAA
[ENA]
¢þ
>WENV180801228
ODJD01015011
[ODJD] human metagenome; G_DNA_Supragingival plaque
304
388
+
Leu
CAA
[ENA]
¢þ
>WENV180805182
ODJG01082443
[ODJG] human metagenome; G_DNA_Supragingival plaque
130
46
-
Leu
CAA
[ENA]
¢þ
>WENV180814163
ODJO01008761
[ODJO] human metagenome; G_DNA_Supragingival plaque
547
463
-
Leu
CAA
[ENA]
¢þ
>WENV180832628
ODKC01002812
[ODKC] human metagenome; G_DNA_Supragingival plaque
3843
3927
+
Leu
CAA
[ENA]
¢þ
>WENV180833927
ODKD01001004
[ODKD] human metagenome; G_DNA_Supragingival plaque
7646
7562
-
Leu
CAA
[ENA]
¢þ
>WENV180846444
ODKT01011284
[ODKT] human metagenome; G_DNA_Supragingival plaque
3235
3319
+
Leu
CAA
[ENA]
¢þ
>WENV180859263
ODLD01000157
[ODLD] human metagenome; G_DNA_Supragingival plaque
44011
43927
-
Leu
CAA
[ENA]
¢þ
>WENV180888811
ODMN01003959
[ODMN] human metagenome; G_DNA_Supragingival plaque
3813
3897
+
Leu
CAA
[ENA]
¢þ
>WENV180922085
ODTJ01001282
[ODTJ] human metagenome; G_DNA_Supragingival plaque
6193
6277
+
Leu
CAA
[ENA]
¢þ
>WENV180922176
ODTJ01001677
[ODTJ] human metagenome; G_DNA_Supragingival plaque
13271
13355
+
Leu
CAA
[ENA]
¢þ
>WENV180927685
ODTM01002459
[ODTM] human metagenome; G_DNA_Supragingival plaque
6126
6210
+
Leu
CAA
[ENA]
¢þ
>WENV180933567
ODTR01000592
[ODTR] human metagenome; G_DNA_Supragingival plaque
7146
7062
-
Leu
CAA
[ENA]
¢þ
>WENV180939563
ODTX01052386
[ODTX] human metagenome; G_DNA_Supragingival plaque
499
415
-
Leu
CAA
[ENA]
¢þ
>WENV180944063
ODUC01006775
[ODUC] human metagenome; G_DNA_Supragingival plaque
4930
5014
+
Leu
CAA
[ENA]
¢þ
>WENV180958073
ODUL01000295
[ODUL] human metagenome; G_DNA_Supragingival plaque
15276
15360
+
Leu
CAA
[ENA]
¢þ
>WENV180972713
ODUW01000069
[ODUW] human metagenome; G_DNA_Supragingival plaque
37562
37646
+
Leu
CAA
[ENA]
¢þ
>WENV180983330
ODVF01008143
[ODVF] human metagenome; G_DNA_Supragingival plaque
130
46
-
Leu
CAA
[ENA]
¢þ
>WENV180984358
ODVG01000047
[ODVG] human metagenome; G_DNA_R_Retroauricular crease
15180
15264
+
Leu
CAA
[ENA]
¢þ
>WENV180986659
ODVK01000286
[ODVK] human metagenome; G_DNA_Supragingival plaque
17098
17014
-
Leu
CAA
[ENA]
¢þ
>WENV180998992
ODVT01004348
[ODVT] human metagenome; G_DNA_Buccal mucosa
4259
4175
-
Leu
CAA
[ENA]
¢þ
>WENV181002841
ODVX01002093
[ODVX] human metagenome; G_DNA_Supragingival plaque
3813
3897
+
Leu
CAA
[ENA]
¢þ
>WENV181008651
ODWE01009977
[ODWE] human metagenome; G_DNA_Supragingival plaque
85
1
-
Leu
CAA
[ENA]
¢þ
>WENV181019715
ODWU01011311
[ODWU] human metagenome; G_DNA_Supragingival plaque
85
1
-
Leu
CAA
[ENA]
¢þ
>WENV181029790
ODXF01004078
[ODXF] human metagenome; G_DNA_Supragingival plaque
99
15
-
Leu
CAA
[ENA]
¢þ
>WENV181050235
ODYD01009695
[ODYD] human metagenome; G_DNA_Supragingival plaque
137
53
-
Leu
CAA
[ENA]
¢þ
>WENV181064998
ODYP01206543
[ODYP] human metagenome; G_DNA_Supragingival plaque
247
163
-
Leu
CAA
[ENA]
¢þ
>WENV181070142
OEAE01000310
[OEAE] human metagenome; G_DNA_Supragingival plaque
16187
16103
-
Leu
CAA
[ENA]
¢þ
>WENV181076676
OEAP01010419
[OEAP] human metagenome; G_DNA_Supragingival plaque
3623
3707
+
Leu
CAA
[ENA]
¢þ
>WENV181079657
OEAS01011581
[OEAS] human metagenome; G_DNA_Supragingival plaque
1230
1146
-
Leu
CAA
[ENA]
¢þ
>WENV181081758
OEAS01367045
[OEAS] human metagenome; G_DNA_Supragingival plaque
115
199
+
Leu
CAA
[ENA]
¢þ
>WENV181082411
OEAT01015745
[OEAT] human metagenome; G_DNA_Supragingival plaque
109
25
-
Leu
CAA
[ENA]
¢þ
>WENV181083361
OEAV01005830
[OEAV] human metagenome; G_DNA_Supragingival plaque
3860
3944
+
Leu
CAA
[ENA]
¢þ
>WENV181090736
OEBC01002962
[OEBC] human metagenome; G_DNA_Supragingival plaque
4351
4267
-
Leu
CAA
[ENA]
¢þ
>WENV181108031
OEEI01062716
[OEEI] human metagenome; G_DNA_Supragingival plaque
187
103
-
Leu
CAA
[ENA]
¢þ
>WENV181121935
OEFL01033739
[OEFL] human metagenome; G_DNA_Supragingival plaque
328
412
+
Leu
CAA
[ENA]
¢þ
>WENV181123611
OEFQ01000100
[OEFQ] human metagenome; G_DNA_Supragingival plaque
26940
27024
+
Leu
CAA
[ENA]
¢þ
>WENV181143104
OEHM01000114
[OEHM] human metagenome; G_DNA_Supragingival plaque
46574
46658
+
Leu
CAA
[ENA]
¢þ
>WENV181156489
OEIE01021050
[OEIE] human metagenome; G_DNA_Supragingival plaque
252
168
-
Leu
CAA
[ENA]
¢þ
>WENV181159053
OEIH01035747
[OEIH] human metagenome; G_DNA_Supragingival plaque
360
276
-
Leu
CAA
[ENA]
¢þ
>WENV181179028
OEJT01000972
[OEJT] human metagenome; G_DNA_Supragingival plaque
4085
4001
-
Leu
CAA
[ENA]
¢þ
>WENV181180733
OEJU01000931
[OEJU] human metagenome; G_DNA_Supragingival plaque
14295
14379
+
Leu
CAA
[ENA]
¢þ
>WENV181181850
OEJV01000416
[OEJV] human metagenome; G_DNA_Supragingival plaque
5
89
+
Leu
CAA
[ENA]
¢þ
>WENV182640858
OJLE01000077
[OJLE] metagenome; surface
45355
45439
+
Leu
CAA
[ENA]
¢þ
>WENV182642382
OJLM01003656
[OJLM] metagenome; surface
1056
972
-
Leu
CAA
[ENA]
¢þ
>WENV182644204
OJLW01012421
[OJLW] metagenome; surface
1473
1557
+
Leu
CAA
[ENA]
¢þ
>WENV182645068
OJLY01002111
[OJLY] metagenome; surface
763
847
+
Leu
CAA
[ENA]
¢þ
>WENV182646109
OJMA01000004
[OJMA] metagenome; surface
149596
149680
+
Leu
CAA
[ENA]
¢þ
>WENV182672005
OJNM01067522
[OJNM] metagenome; surface
533
617
+
Leu
CAA
[ENA]
¢þ
>WENV183508237
OMHC01000316
[OMHC] human oral metagenome; human oral
2924
2840
-
Leu
CAA
[ENA]
¢þ
>WENV183508502
OMHD01007680
[OMHD] human oral metagenome; human oral
309
393
+
Leu
CAA
[ENA]
¢þ
>WENV183509580
OMHI01015044
[OMHI] human oral metagenome; human oral
297
381
+
Leu
CAA
[ENA]
¢þ
>C181067605
CP022527
Betaproteobacteria
Neisseria sp. KEM232 [CP022527]
18085
18169
+
Leu
CAA
-
¡û
>C181198233
CP031252
Betaproteobacteria
Neisseria elongata M15911 [CP031252]
1957314
1957398
+
Leu
CAA
-
¡û
>C181198429
CP031255
Betaproteobacteria
Neisseria elongata M15910 [CP031255]
2424937
2424853
-
Leu
CAA
-
¡û
>C181213179
LS483435
Betaproteobacteria
Neisseria elongata subsp. glycolytica NCTC11050 [LS483435]
947796
947880
+
Leu
CAA
-
¡û
>W1810227373
POXH01000007
Betaproteobacteria
Neisseria elongata C2010010207 [POXH]
52949
52865
-
Leu
CAA
[ENA]
¡û
>W1810227465
POXJ01000003
Betaproteobacteria
Neisseria elongata C2011003085 [POXJ]
37832
37748
-
Leu
CAA
[ENA]
¡û
>W1810227928
POXS01000005
Betaproteobacteria
Neisseria elongata C2013010062 [POXS]
111714
111798
+
Leu
CAA
[ENA]
¡û
>W1810228079
POXV01000004
Betaproteobacteria
Neisseria elongata C2013018262 [POXV]
104929
105013
+
Leu
CAA
[ENA]
¡û
>W1810228252
POXY01000005
Betaproteobacteria
Neisseria elongata C2014003241 [POXY]
53151
53235
+
Leu
CAA
[ENA]
¡û
>C151033100
CP007726
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [CP007726]
521188
521272
+
Leu
CAA
[Ensembl]
¡û
>W10109814
ADBF01000230
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [ADBF]
28089
28173
+
Leu
CAA
[ENA]
¡û
>W11112201
ADBF01000230
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [ADBF]
28089
28173
+
Leu
CAA
[ENA]
¡û
>W1511439622
JUOC01000006
Betaproteobacteria
Neisseria bacilliformis 914_NLAC [JUOC]
681
597
-
Leu
CAA
[ENA]
¡û
>W1511456084
JVHH01000057
Betaproteobacteria
Neisseria elongata 431_NMEN [JVHH]
45038
45122
+
Leu
CAA
[ENA]
¡û
>W1511457694
JVIM01000055
Betaproteobacteria
Neisseria elongata 404_NMEN [JVIM]
44939
45023
+
Leu
CAA
[ENA]
¡û
>W1511464695
JVQC01000062
Betaproteobacteria
Neisseria bacilliformis 203_NMEN [JVQC]
48224
48308
+
Leu
CAA
[ENA]
¡û
>W1511469706
JVVT01000096
Betaproteobacteria
Neisseria elongata 1279_NMEN [JVVT]
22254
22170
-
Leu
CAA
[ENA]
¡û
>W11156187
AFAY01000003
Betaproteobacteria
Neisseria bacilliformis ATCC BAA-1200 [AFAY]
58904
58820
-
Leu
CAA
[ENA]
¡û
>W1710563496
FOPS01000003
Betaproteobacteria
Neisseria elongata subsp. elongata [FOPS]
74221
74137
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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