This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.97617 (94 seq.)
>W1710777151
LJAS01000015
Actinomycetota
Cutibacterium acnes [LJAS]
1139525
1139607
+
Tyr
GTA
[ENA]
¡û
>W1710777181
LJAT01000003
Actinomycetota
Cutibacterium acnes [LJAT]
412133
412215
+
Tyr
GTA
[ENA]
¡û
>W1711334218
MBQD01000026
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
21066
20984
-
Tyr
GTA
[ENA]
¡û
>C171091491
CP019229
Actinomycetota
Tessaracoccus sp. T2.5-30 [CP019229]
2578290
2578372
+
Tyr
GTA
-
¡û
>W141053852
AODA01000001
Actinomycetota
Cutibacterium acnes HL201PA1 [AODA]
53554
53472
-
Tyr
GTA
[ENA]
¡û
>WENV180728764
ODGU01090224
[ODGU] human metagenome; G_DNA_Supragingival plaque
121
39
-
Tyr
GTA
[ENA]
¢þ
>WENV180734554
ODGZ01012513
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1334
1416
+
Tyr
GTA
[ENA]
¢þ
>WENV180735858
ODHB01001129
[ODHB] human metagenome; G_DNA_Supragingival plaque
439
521
+
Tyr
GTA
[ENA]
¢þ
>WENV180736246
ODHB01012791
[ODHB] human metagenome; G_DNA_Supragingival plaque
566
648
+
Tyr
GTA
[ENA]
¢þ
>WENV180749940
ODHS01000145
[ODHS] human metagenome; G_DNA_Supragingival plaque
9037
8955
-
Tyr
GTA
[ENA]
¢þ
>WENV180777381
ODIL01003204
[ODIL] human metagenome; G_DNA_Supragingival plaque
2467
2385
-
Tyr
GTA
[ENA]
¢þ
>WENV180782111
ODIP01021893
[ODIP] human metagenome; G_DNA_Supragingival plaque
797
879
+
Tyr
GTA
[ENA]
¢þ
>WENV180787842
ODIS01018523
[ODIS] human metagenome; G_DNA_Supragingival plaque
1028
1110
+
Tyr
GTA
[ENA]
¢þ
>WENV180796490
ODJB01005519
[ODJB] human metagenome; G_DNA_Supragingival plaque
776
694
-
Tyr
GTA
[ENA]
¢þ
>WENV180801732
ODJD01134161
[ODJD] human metagenome; G_DNA_Supragingival plaque
95
13
-
Tyr
GTA
[ENA]
¢þ
>WENV180804540
ODJG01005212
[ODJG] human metagenome; G_DNA_Supragingival plaque
4016
3934
-
Tyr
GTA
[ENA]
¢þ
>WENV180805238
ODJG01111132
[ODJG] human metagenome; G_DNA_Supragingival plaque
237
319
+
Tyr
GTA
[ENA]
¢þ
>WENV180814121
ODJO01007669
[ODJO] human metagenome; G_DNA_Supragingival plaque
1580
1662
+
Tyr
GTA
[ENA]
¢þ
>WENV180823447
ODJW01032486
[ODJW] human metagenome; G_DNA_Supragingival plaque
665
748
+
Tyr
GTA
[ENA]
¢þ
>WENV180824633
ODJX01022410
[ODJX] human metagenome; G_DNA_Supragingival plaque
752
834
+
Tyr
GTA
[ENA]
¢þ
>WENV180832896
ODKC01007179
[ODKC] human metagenome; G_DNA_Supragingival plaque
2668
2750
+
Tyr
GTA
[ENA]
¢þ
>WENV180834291
ODKD01009715
[ODKD] human metagenome; G_DNA_Supragingival plaque
1679
1597
-
Tyr
GTA
[ENA]
¢þ
>WENV180836074
ODKE01035945
[ODKE] human metagenome; G_DNA_Supragingival plaque
745
827
+
Tyr
GTA
[ENA]
¢þ
>WENV180844403
ODKN01105245
[ODKN] human metagenome; G_DNA_Supragingival plaque
268
350
+
Tyr
GTA
[ENA]
¢þ
>WENV180846850
ODKT01025967
[ODKT] human metagenome; G_DNA_Supragingival plaque
1667
1585
-
Tyr
GTA
[ENA]
¢þ
>WENV180859406
ODLD01000624
[ODLD] human metagenome; G_DNA_Supragingival plaque
17597
17515
-
Tyr
GTA
[ENA]
¢þ
>WENV180881689
ODMA01039295
[ODMA] human metagenome; G_DNA_Supragingival plaque
91
9
-
Tyr
GTA
[ENA]
¢þ
>WENV180889713
ODMN01111066
[ODMN] human metagenome; G_DNA_Supragingival plaque
108
26
-
Tyr
GTA
[ENA]
¢þ
>WENV180922611
ODTJ01006828
[ODTJ] human metagenome; G_DNA_Supragingival plaque
2222
2140
-
Tyr
GTA
[ENA]
¢þ
>WENV180924605
ODTK01009031
[ODTK] human metagenome; G_DNA_Supragingival plaque
1540
1458
-
Tyr
GTA
[ENA]
¢þ
>WENV180927833
ODTM01004800
[ODTM] human metagenome; G_DNA_Supragingival plaque
4128
4210
+
Tyr
GTA
[ENA]
¢þ
>WENV180928106
ODTM01015192
[ODTM] human metagenome; G_DNA_Supragingival plaque
1665
1583
-
Tyr
GTA
[ENA]
¢þ
>WENV180933339
ODTR01000037
[ODTR] human metagenome; G_DNA_Supragingival plaque
39763
39681
-
Tyr
GTA
[ENA]
¢þ
>WENV180934400
ODTS01000019
[ODTS] human metagenome; G_DNA_Subgingival plaque
42461
42543
+
Tyr
GTA
[ENA]
¢þ
>WENV180935143
ODTS01073786
[ODTS] human metagenome; G_DNA_Subgingival plaque
99
17
-
Tyr
GTA
[ENA]
¢þ
>WENV180938647
ODTX01004480
[ODTX] human metagenome; G_DNA_Supragingival plaque
4163
4081
-
Tyr
GTA
[ENA]
¢þ
>WENV180938996
ODTX01011793
[ODTX] human metagenome; G_DNA_Supragingival plaque
2497
2579
+
Tyr
GTA
[ENA]
¢þ
>WENV180940242
ODTY01002302
[ODTY] human metagenome; G_DNA_Anterior nares
183
101
-
Tyr
GTA
[ENA]
¢þ
>WENV180944829
ODUC01039239
[ODUC] human metagenome; G_DNA_Supragingival plaque
743
825
+
Tyr
GTA
[ENA]
¢þ
>WENV180958237
ODUL01001466
[ODUL] human metagenome; G_DNA_Supragingival plaque
6489
6407
-
Tyr
GTA
[ENA]
¢þ
>WENV180964031
ODUO01000143
[ODUO] human metagenome; G_DNA_Supragingival plaque
21718
21636
-
Tyr
GTA
[ENA]
¢þ
>WENV180973300
ODUW01003067
[ODUW] human metagenome; G_DNA_Supragingival plaque
6135
6217
+
Tyr
GTA
[ENA]
¢þ
>WENV180980642
ODVE01000884
[ODVE] human metagenome; G_DNA_Supragingival plaque
11023
11105
+
Tyr
GTA
[ENA]
¢þ
>WENV180982718
ODVF01000373
[ODVF] human metagenome; G_DNA_Supragingival plaque
13288
13370
+
Tyr
GTA
[ENA]
¢þ
>WENV180987760
ODVK01119249
[ODVK] human metagenome; G_DNA_Supragingival plaque
58
140
+
Tyr
GTA
[ENA]
¢þ
>WENV181002103
ODVX01000019
[ODVX] human metagenome; G_DNA_Supragingival plaque
45948
46030
+
Tyr
GTA
[ENA]
¢þ
>WENV181008943
ODWE01020647
[ODWE] human metagenome; G_DNA_Supragingival plaque
279
361
+
Tyr
GTA
[ENA]
¢þ
>WENV181009141
ODWE01033427
[ODWE] human metagenome; G_DNA_Supragingival plaque
1228
1146
-
Tyr
GTA
[ENA]
¢þ
>WENV181050400
ODYD01017199
[ODYD] human metagenome; G_DNA_Supragingival plaque
272
354
+
Tyr
GTA
[ENA]
¢þ
>WENV181050443
ODYD01019191
[ODYD] human metagenome; G_DNA_Supragingival plaque
749
831
+
Tyr
GTA
[ENA]
¢þ
>WENV181064106
ODYP01010351
[ODYP] human metagenome; G_DNA_Supragingival plaque
1517
1435
-
Tyr
GTA
[ENA]
¢þ
>WENV181067736
ODZI01047071
[ODZI] human metagenome; G_DNA_Supragingival plaque
582
500
-
Tyr
GTA
[ENA]
¢þ
>WENV181070473
OEAE01002047
[OEAE] human metagenome; G_DNA_Supragingival plaque
5772
5854
+
Tyr
GTA
[ENA]
¢þ
>WENV181076019
OEAP01001303
[OEAP] human metagenome; G_DNA_Supragingival plaque
1921
2003
+
Tyr
GTA
[ENA]
¢þ
>WENV181079095
OEAS01001942
[OEAS] human metagenome; G_DNA_Supragingival plaque
3657
3575
-
Tyr
GTA
[ENA]
¢þ
>WENV181079430
OEAS01006445
[OEAS] human metagenome; G_DNA_Supragingival plaque
3317
3399
+
Tyr
GTA
[ENA]
¢þ
>WENV181082571
OEAV01000089
[OEAV] human metagenome; G_DNA_Supragingival plaque
12091
12173
+
Tyr
GTA
[ENA]
¢þ
>WENV181091463
OEBC01036510
[OEBC] human metagenome; G_DNA_Supragingival plaque
894
976
+
Tyr
GTA
[ENA]
¢þ
>WENV181121911
OEFL01029697
[OEFL] human metagenome; G_DNA_Supragingival plaque
768
850
+
Tyr
GTA
[ENA]
¢þ
>WENV181146247
OEHQ01002249
[OEHQ] human metagenome; G_DNA_Supragingival plaque
5922
6004
+
Tyr
GTA
[ENA]
¢þ
>WENV181146605
OEHQ01011463
[OEHQ] human metagenome; G_DNA_Supragingival plaque
1238
1156
-
Tyr
GTA
[ENA]
¢þ
>WENV181152671
OEIA01003845
[OEIA] human metagenome; G_DNA_Supragingival plaque
4539
4621
+
Tyr
GTA
[ENA]
¢þ
>WENV181156366
OEIE01011392
[OEIE] human metagenome; G_DNA_Supragingival plaque
1616
1698
+
Tyr
GTA
[ENA]
¢þ
>WENV181159334
OEIH01182156
[OEIH] human metagenome; G_DNA_Supragingival plaque
111
29
-
Tyr
GTA
[ENA]
¢þ
>WENV181161156
OEIK01188414
[OEIK] human metagenome; G_DNA_Supragingival plaque
91
9
-
Tyr
GTA
[ENA]
¢þ
>WENV181177503
OEJS01003347
[OEJS] human metagenome; G_DNA_Supragingival plaque
2062
2144
+
Tyr
GTA
[ENA]
¢þ
>WENV181178849
OEJT01000383
[OEJT] human metagenome; G_DNA_Supragingival plaque
24085
24003
-
Tyr
GTA
[ENA]
¢þ
>WENV181181741
OEJV01000150
[OEJV] human metagenome; G_DNA_Supragingival plaque
30086
30004
-
Tyr
GTA
[ENA]
¢þ
>W141233171
BAVM01000026
Actinomycetota
Cutibacterium acnes JCM 18909 [BAVM]
20587
20669
+
Tyr
GTA
[ENA]
¡û
>WENV183508664
OMHE01010662
[OMHE] human oral metagenome; human oral
401
319
-
Tyr
GTA
[ENA]
¢þ
>WENV183509351
OMHH01014301
[OMHH] human oral metagenome; human oral
360
278
-
Tyr
GTA
[ENA]
¢þ
>WENV183710392
PDWI01045557
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
409
325
-
Tyr
GTA
[ENA]
¢þ
>WENV183712765
PDWI01113093
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
86
4
-
Tyr
GTA
[ENA]
¢þ
>WENV183718893
PDWJ01007445
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
8015
7931
-
Tyr
GTA
[ENA]
¢þ
>WENV170554161
CXWK01050633
[CXWK] wastewater metagenome; activated sludge
150
66
-
Tyr
GTA
[ENA]
¢þ
>C191173847
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
2545966
2545884
-
Tyr
GTA
-
¡û
>C191210862
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
2524380
2524298
-
Tyr
GTA
-
¡û
>C191214577
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
2521120
2521038
-
Tyr
GTA
-
¡û
>W141557444
JHVD01000011
Actinomycetota
Propionibacteriaceae bacterium P6A17 [JHVD]
17131
17049
-
Tyr
GTA
[ENA]
¡û
>W1911076235
NMVI01000016
Actinomycetota
Parenemella sanctibonifatiensis NML 160184 [NMVI]
89127
89045
-
Tyr
GTA
[ENA]
¡û
>W1911076295
NMVJ01000010
Actinomycetota
Parenemella sanctibonifatiensis NML 150081 [NMVJ]
62534
62452
-
Tyr
GTA
[ENA]
¡û
>W1911076417
NMVM01000002
Actinomycetota
Enemella evansiae NML 090529 [NMVM]
162939
163023
+
Tyr
GTA
[ENA]
¡û
>W1911076467
NMVN01000013
Actinomycetota
Enemella evansiae NML 061049 [NMVN]
209399
209483
+
Tyr
GTA
[ENA]
¡û
>W1911076506
NMVO01000013
Actinomycetota
Enemella evansiae NML 030167 [NMVO]
52220
52304
+
Tyr
GTA
[ENA]
¡û
>W1911076555
NMVP01000015
Actinomycetota
Enemella evansiae NML 020265 [NMVP]
5964
6048
+
Tyr
GTA
[ENA]
¡û
>W1911575872
PDJP01000001
Actinomycetota
Propionibacteriaceae bacterium ES.041 [PDJP]
3645826
3645742
-
Tyr
GTA
[ENA]
¡û
>W1810010404
BFFM01000010
Actinomycetota
Cutibacterium acnes JCM 18919 [BFFM]
23750
23668
-
Tyr
GTA
[ENA]
¡û
>W1810679813
QKRC01000001
Actinomycetota
Cutibacterium acnes Asn12 [QKRC]
495883
495801
-
Tyr
GTA
[ENA]
¡û
>C121002954
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
2558305
2558223
-
Tyr
GTA
[Ensembl]
¡û
>W1610074499
BCWS01000005
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
27027
26945
-
Tyr
GTA
[ENA]
¡û
>W1610641337
LJAS01000015
Actinomycetota
Cutibacterium acnes [LJAS]
1139525
1139607
+
Tyr
GTA
[ENA]
¡û
>W1610641367
LJAT01000003
Actinomycetota
Cutibacterium acnes [LJAT]
412133
412215
+
Tyr
GTA
[ENA]
¡û
>W1611066185
MBQD01000026
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
21066
20984
-
Tyr
GTA
[ENA]
¡û
>W1710071617
BCWS01000005
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
27027
26945
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK