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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.97679 (39 seq.)
>W1710880625
LMSL01000040
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
33665
33749
+
Leu
GAG
[ENA]
¡û
>W1711384963
MEDO01000017
Gammaproteobacteria
Arenimonas sp. SCN 70-307 [MEDO]
35476
35392
-
Leu
GAG
[ENA]
¡û
>W1711424101
MIDT01000081
Gammaproteobacteria
Xanthomonadales bacterium GWF1_69_6 [MIDT]
5255
5171
-
Leu
GAG
[ENA]
¡û
>W131222296
AUBD01000008
Gammaproteobacteria
Silanimonas lenta DSM 16282 [AUBD]
155650
155566
-
Leu
GAG
[ENA]
¡û
>W131227501
AUFF01000001
Gammaproteobacteria
Arenimonas composti DSM 18010 [AUFF]
165974
166058
+
Leu
GAG
[ENA]
¡û
>W131046187
AMSF01000016
Gammaproteobacteria
Dyella ginsengisoli LA-4 [AMSF]
59929
59845
-
Leu
GAG
[ENA]
¡û
>WENV180036064
FTLB01217637
[FTLB] metagenome; soil
90
6
-
Leu
GAG
[ENA]
¢þ
>WENV180692582
OCZS010626237
[OCZS] soil metagenome; soil
245
161
-
Leu
GAG
[ENA]
¢þ
>W141094198
AVCH01000021
Gammaproteobacteria
Arenimonas malthae CC-JY-1 [AVCH]
6633
6717
+
Leu
GAG
[ENA]
¡û
>WENV181166409
OEIU01000245
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
23836
23752
-
Leu
GAG
[ENA]
¢þ
>WENV181166947
OEIU01004726
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
3173
3089
-
Leu
GAG
[ENA]
¢þ
>WENV181172338
OEIV010611519
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
83
-1
-
Leu
GAG
[ENA]
¢þ
>WENV170018656
BBPD01000268
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
10407
10491
+
Leu
GAG
[ENA]
¢þ
>WENV170019732
BBPE01000345
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
15116
15032
-
Leu
GAG
[ENA]
¢þ
>WENV170654693
JRYL01005777
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
779
863
+
Leu
GAG
[ENA]
¢þ
>WENV170713974
LNFM01048943
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2271
2187
-
Leu
GAG
[ENA]
¢þ
>C181185981
CP029843
Gammaproteobacteria
Lysobacter maris HZ9B [CP029843]
1658252
1658336
+
Leu
GAG
-
¡û
>C191139395
CP035376
Gammaproteobacteria
Luteimonas sp. YGD11-2 [CP035376]
2048625
2048541
-
Leu
GAG
-
¡û
>C191165700
CP039383
Gammaproteobacteria
Luteimonas yindakuii S-1072 [CP039383]
1940098
1940014
-
Leu
GAG
-
¡û
>W1910896595
NFZS01000003
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
123204
123120
-
Leu
GAG
[ENA]
¡û
>W1911199824
NRDP01000035
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
1977
1893
-
Leu
GAG
[ENA]
¡û
>W1911405216
NWQL01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0213 [NWQL]
774511
774595
+
Leu
GAG
[ENA]
¡û
>W1810354850
PVLF01000005
Gammaproteobacteria
Arenimonas caeni z29 [PVLF]
168092
168176
+
Leu
GAG
[ENA]
¡û
>W1810485566
QAVX01000003
Gammaproteobacteria
Dyella sp. C11 [QAVX]
118253
118337
+
Leu
GAG
[ENA]
¡û
>W1810628337
QICJ01000002
Gammaproteobacteria
Dyella sp. AtDHG13 [QICJ]
324085
324001
-
Leu
GAG
[ENA]
¡û
>W1810629445
QIRF01000029
Gammaproteobacteria
Dyella sp. C9 [QIRF]
9878
9794
-
Leu
GAG
[ENA]
¡û
>W1810762595
QQAH01000001
Gammaproteobacteria
Dyella tabacisoli L4-6 [QQAH]
277781
277697
-
Leu
GAG
[ENA]
¡û
>W1810783254
QQSY01000001
Gammaproteobacteria
Dyella solisilvae DHG54 [QQSY]
226171
226087
-
Leu
GAG
[ENA]
¡û
>W1810785111
QRBE01000010
Gammaproteobacteria
Dyella monticola 4G-K06 [QRBE]
109842
109758
-
Leu
GAG
[ENA]
¡û
>C151023720
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
1453217
1453301
+
Leu
GAG
[Ensembl]
¡û
>C151039084
CP008884
Gammaproteobacteria
Dyella japonica A8 [CP008884]
2805610
2805694
+
Leu
GAG
[Ensembl]
¡û
>W1511686292
LFQR01000058
Gammaproteobacteria
Frateuria defendens Hyalesthes Obsoletus HyOG [LFQR]
83736
83820
+
Leu
GAG
[ENA]
¡û
>C161078234
CP014841
Gammaproteobacteria
Dyella thiooxydans ATSB10 [CP014841]
962688
962772
+
Leu
GAG
[Ensembl]
¡û
>W121113906
ALOY01000178
Gammaproteobacteria
Dyella japonica A8 [ALOY]
95951
95867
-
Leu
GAG
[ENA]
¡û
>W1610742971
LMSL01000040
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
33665
33749
+
Leu
GAG
[ENA]
¡û
>W1710519791
FNFA01000002
Gammaproteobacteria
Dyella jiangningensis [FNFA]
324325
324241
-
Leu
GAG
[ENA]
¡û
>W1710541157
FNYC01000003
Gammaproteobacteria
Frateuria terrea [FNYC]
463728
463644
-
Leu
GAG
[ENA]
¡û
>W1710560313
FONH01000002
Gammaproteobacteria
Dyella marensis [FONH]
437861
437777
-
Leu
GAG
[ENA]
¡û
>W1710573382
FOXL01000004
Gammaproteobacteria
Frateuria terrea [FOXL]
87692
87776
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK