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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.97722 (40 seq.)
>W1710859900
LMCL01000011
Alphaproteobacteria
Aminobacter sp. DSM 101952 Root100 [LMCL]
20635
20551
-
Tyr
GTA
[ENA]
¡û
>W1710865039
LMGJ01000004
Alphaproteobacteria
Mesorhizobium sp. Root157 [LMGJ]
125265
125349
+
Tyr
GTA
[ENA]
¡û
>W1711334230
MBQE01000001
Alphaproteobacteria
Stappia indica [MBQE]
982365
982281
-
Tyr
GTA
[ENA]
¡û
>W1711353662
MDET01000006
Alphaproteobacteria
Pseudaminobacter manganicus [MDET]
5582
5498
-
Tyr
GTA
[ENA]
¡û
>W1711385452
MEEF01000098
Alphaproteobacteria
Mesorhizobium sp. SCN 65-20 [MEEF]
526
442
-
Tyr
GTA
[ENA]
¡û
>W1711501786
MKRZ01000204
Alphaproteobacteria
Mesorhizobium sp. 61-13 [MKRZ]
1086
1002
-
Tyr
GTA
[ENA]
¡û
>W131167076
ARCZ01000001
Alphaproteobacteria
Hoeflea sp. 108 [ARCZ]
2330116
2330200
+
Tyr
GTA
[ENA]
¡û
>WENV180693911
OCZS011748317
[OCZS] soil metagenome; soil
146
62
-
Tyr
GTA
[ENA]
¢þ
>WENV181168269
OEIU01236968
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
258
342
+
Tyr
GTA
[ENA]
¢þ
>WENV182400496
OIEQ01000346
[OIEQ] human gut metagenome; human gut
597
513
-
Tyr
GTA
[ENA]
¢þ
>WENV182400776
OIER01000023
[OIER] human gut metagenome; human gut
154328
154244
-
Tyr
GTA
[ENA]
¢þ
>WENV182946944
OKVL01000325
[OKVL] human gut metagenome; human gut
18961
18877
-
Tyr
GTA
[ENA]
¢þ
>WENV182947965
OKVN01000686
[OKVN] human gut metagenome; human gut
647
563
-
Tyr
GTA
[ENA]
¢þ
>WENV170929772
MDTG01155902
[MDTG] marine metagenome; seawater
387
303
-
Tyr
GTA
[ENA]
¢þ
>C181029172
CP017940
Alphaproteobacteria
Phyllobacterium zundukense Tri-48; RCAM 03910 [CP017940]
1950426
1950342
-
Tyr
GTA
-
¡û
>C181129990
CP026265
Alphaproteobacteria
Aminobacter sp. MSH1 [CP026265]
3642470
3642386
-
Tyr
GTA
-
¡û
>C181171006
CP028968
Alphaproteobacteria
Aminobacter sp. MSH1 [CP028968]
3642136
3642052
-
Tyr
GTA
-
¡û
>W1910501796
FYAU01000013
Alphaproteobacteria
Stappia sp. TSB10P1A [FYAU]
155473
155557
+
Tyr
GTA
[ENA]
¡û
>W1910501862
FYAV01000054
Alphaproteobacteria
Stappia sp. TSB10GB4 [FYAV]
156435
156519
+
Tyr
GTA
[ENA]
¡û
>W1910501890
FYAW01000008
Alphaproteobacteria
Stappia sp. P2PMeth1 [FYAW]
99979
100063
+
Tyr
GTA
[ENA]
¡û
>W1910839875
MZMT01000003
Alphaproteobacteria
Phyllobacterium zundukense Tri-38 [MZMT]
449682
449766
+
Tyr
GTA
[ENA]
¡û
>W1911494906
OBML01000015
Alphaproteobacteria
Stappia indica USBA 352 [OBML]
406
322
-
Tyr
GTA
[ENA]
¡û
>W1810090785
PGGM01000002
Alphaproteobacteria
Phyllobacterium sophorae CCBAU 03422 [PGGM]
660258
660342
+
Tyr
GTA
[ENA]
¡û
>W1810090847
PGGN01000002
Alphaproteobacteria
Phyllobacterium endophyticum PEPV15 [PGGN]
854615
854531
-
Tyr
GTA
[ENA]
¡û
>W1810090878
PGGO01000005
Alphaproteobacteria
Phyllobacterium brassicacearum STM 196 [PGGO]
296576
296492
-
Tyr
GTA
[ENA]
¡û
>W1810346617
PVBT01000001
Alphaproteobacteria
Phyllobacterium myrsinacearum DSM 5892 [PVBT]
996173
996257
+
Tyr
GTA
[ENA]
¡û
>W1810390409
PXYL01000001
Alphaproteobacteria
Mesorhizobium soli JCM 19897 [PXYL]
651708
651792
+
Tyr
GTA
[ENA]
¡û
>W1810486997
QAYG01000002
Alphaproteobacteria
Breoghania corrubedonensis DSM 23382 [QAYG]
302244
302160
-
Tyr
GTA
[ENA]
¡û
>W1810596933
QGGX01000013
Alphaproteobacteria
Aminobacter sp. AP02 [QGGX]
82627
82711
+
Tyr
GTA
[ENA]
¡û
>W1810608808
QGTP01000001
Alphaproteobacteria
Phyllobacterium myrsinacearum IAM 13584 [QGTP]
674906
674990
+
Tyr
GTA
[ENA]
¡û
>W1810692936
QLKY01000003
Alphaproteobacteria
Phyllobacterium myrsinacearum HAMBI_1992 [QLKY]
419455
419371
-
Tyr
GTA
[ENA]
¡û
>W1810759520
QPJM01000003
Alphaproteobacteria
Phyllobacterium bourgognense 31-25a [QPJM]
370475
370559
+
Tyr
GTA
[ENA]
¡û
>C11117255
CP002568
Alphaproteobacteria
Polymorphum gilvum SL003B-26A1 [CP002568]
1821683
1821767
+
Tyr
GTA
[Ensembl]
¡û
>C161081608
CP015005
Alphaproteobacteria
Aminobacter aminovorans KCTC 2477 [CP015005]
3557069
3557153
+
Tyr
GTA
[Ensembl]
¡û
>W121085102
AKIZ01000002
Alphaproteobacteria
Phyllobacterium sp. YR531 [AKIZ]
106466
106550
+
Tyr
GTA
[ENA]
¡û
>W1610722246
LMCL01000011
Alphaproteobacteria
Aminobacter sp. DSM 101952 Root100 [LMCL]
20635
20551
-
Tyr
GTA
[ENA]
¡û
>W1610727385
LMGJ01000004
Alphaproteobacteria
Mesorhizobium sp. Root157 [LMGJ]
125265
125349
+
Tyr
GTA
[ENA]
¡û
>W1611066197
MBQE01000001
Alphaproteobacteria
Stappia indica [MBQE]
982365
982281
-
Tyr
GTA
[ENA]
¡û
>WENV080119
AATO01006537
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
54
140
+
Tyr
GTA
[ENA]
>W1710524713
FNIY01000001
Alphaproteobacteria
Phyllobacterium sp. OV277 [FNIY]
123373
123289
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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