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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.97755 (57 seq.)
>W1710785540
LJHY01000016
Alphaproteobacteria
Novosphingobium sp. AAP83 [LJHY]
287893
287808
-
Tyr
GTA
[ENA]
¡û
>W1710927025
LOEX01000091
Alphaproteobacteria
Sphingomonadales bacterium BRH_c42 [LOEX]
9425
9510
+
Tyr
GTA
[ENA]
¡û
>W131058871
ANFZ01000009
Alphaproteobacteria
Blastomonas sp. AAP53 [ANFZ]
689992
689907
-
Tyr
GTA
[ENA]
¡û
>W1711072140
LSHI01000005
Alphaproteobacteria
Blastomonas sp. CCH9-F3 [LSHI]
74129
74214
+
Tyr
GTA
[ENA]
¡û
>W1711072251
LSHK01000075
Alphaproteobacteria
Blastomonas sp. CCH8-E1 [LSHK]
46482
46397
-
Tyr
GTA
[ENA]
¡û
>W1711072271
LSHL01000053
Alphaproteobacteria
Blastomonas sp. CCH10-E1 [LSHL]
86594
86509
-
Tyr
GTA
[ENA]
¡û
>W1711072382
LSHN01000103
Alphaproteobacteria
Blastomonas sp. CCH13-E1 [LSHN]
8094
8009
-
Tyr
GTA
[ENA]
¡û
>W1711072402
LSHO01000032
Alphaproteobacteria
Blastomonas sp. CCH2-E1 [LSHO]
75550
75635
+
Tyr
GTA
[ENA]
¡û
>W1711072575
LSHS01000085
Alphaproteobacteria
Blastomonas sp. CCH8-A3 [LSHS]
46367
46282
-
Tyr
GTA
[ENA]
¡û
>W1711072607
LSHT01000036
Alphaproteobacteria
Sphingomonas sp. CCH18-B1 [LSHT]
46351
46266
-
Tyr
GTA
[ENA]
¡û
>W1711072712
LSHV01000149
Alphaproteobacteria
Blastomonas sp. CCH15-G10 [LSHV]
74630
74715
+
Tyr
GTA
[ENA]
¡û
>W1711073461
LSIO01000105
Alphaproteobacteria
Blastomonas sp. CCH5-A3 [LSIO]
107465
107550
+
Tyr
GTA
[ENA]
¡û
>W1711073522
LSIP01001075
Alphaproteobacteria
Erythrobacter donghaensis [LSIP]
4364
4449
+
Tyr
GTA
[ENA]
¡û
>W1711075061
LSKB01000095
Alphaproteobacteria
Blastomonas sp. CCH11-A4 [LSKB]
74630
74715
+
Tyr
GTA
[ENA]
¡û
>W1711075838
LSKS01000631
Betaproteobacteria
Acidovorax sp. CCH12-A4 [LSKS]
27559
27474
-
Tyr
GTA
[ENA]
¡û
>WENV181188923
OEOE01481684
[OEOE] activated sludge metagenome; Activated Sludge
11
96
+
Tyr
GTA
[ENA]
¡û
>WENV181227170
OFDN01002731
[OFDN] hot springs metagenome; Water
8200
8285
+
Tyr
GTA
[ENA]
¡û
>WENV183727825
PJTP01000794
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
972
1057
+
Tyr
GTA
[ENA]
¡û
>WENV170002415
AGTN01024465
[AGTN] bioreactor metagenome; poplar biomass
254
169
-
Tyr
GTA
[ENA]
¡û
>WENV170004333
AGTN01642792
[AGTN] bioreactor metagenome; poplar biomass
333
248
-
Tyr
GTA
[ENA]
¡û
>WENV170555716
CXWL01001939
[CXWL] groundwater metagenome; biofilm material
102914
102829
-
Tyr
GTA
[ENA]
¡û
>WENV170555940
CXWL01003312
[CXWL] groundwater metagenome; biofilm material
33905
33990
+
Tyr
GTA
[ENA]
¡û
>C141006120
CP006644
Alphaproteobacteria
Sphingomonas sanxanigenens DSM 19645 = NX02 [CP006644]
4646827
4646742
-
Tyr
GTA
[Ensembl]
¡û
>W1911823506
QZVQ01000004
Alphaproteobacteria
Croceibacterium ferulae SX2RGS8 [QZVQ]
342113
342198
+
Tyr
GTA
[ENA]
¡û
>W1810658695
QJJM01000016
Alphaproteobacteria
Blastomonas natatoria DSM 3183 [QJJM]
87590
87675
+
Tyr
GTA
[ENA]
¡û
>W1810683165
QKVT01000001
Alphaproteobacteria
Blastomonas sp. UPD001 [QKVT]
875593
875508
-
Tyr
GTA
[ENA]
¡û
>W2010585598
JABAID010000006
Alphaproteobacteria
Novosphingobium sp. ERN07 [JABAID]
91637
91722
+
Tyr
GTA
[ENA]
¡û
>W2011350496
QZVQ01000004
Alphaproteobacteria
Croceibacterium ferulae SX2RGS8 [QZVQ]
342113
342198
+
Tyr
GTA
[ENA]
¡û
>W2011532288
SBKP01000008
Alphaproteobacteria
Sphingobium sp. CHR27 [SBKP]
128580
128665
+
Tyr
GTA
[ENA]
¡û
>W2110023598
BMGD01000003
Alphaproteobacteria
Blastomonas aquatica CGMCC 1.12851 [BMGD]
824459
824544
+
Tyr
GTA
[ENA]
¡û
>W2110028999
BMKL01000001
Alphaproteobacteria
Altererythrobacter deserti CGMCC 1.15959 [BMKL]
708631
708716
+
Tyr
GTA
[ENA]
¡û
>W2110050098
BMZD01000002
Alphaproteobacteria
Novosphingobium arvoryzae KCTC 32422 [BMZD]
105516
105431
-
Tyr
GTA
[ENA]
¡û
>W2110663588
JAHXZS010000001
Alphaproteobacteria
Aquisediminimonas sediminicola CH68-4 [JAHXZS]
951495
951410
-
Tyr
GTA
[ENA]
¡û
>C241105707
CP046120
Alphaproteobacteria
Novosphingobium sp. Gsoil 351 [CP046120]
3574236
3574321
+
Tyr
GTA
-
¡û
>W1511352520
JROG01000003
Alphaproteobacteria
Sphingomonas sp. 35-24ZXX 35-24ZXX 35-24zxx [JROG]
586915
586830
-
Tyr
GTA
[ENA]
¡û
>W1610071191
BCTW01000010
Alphaproteobacteria
Novosphingobium lentum NBRC 107847 [BCTW]
13900
13815
-
Tyr
GTA
[ENA]
¡û
>W1610648929
LJHP01000001
Alphaproteobacteria
Blastomonas sp. AAP25 [LJHP]
28574
28489
-
Tyr
GTA
[ENA]
¡û
>W1610649346
LJHY01000016
Alphaproteobacteria
Novosphingobium sp. AAP83 [LJHY]
287893
287808
-
Tyr
GTA
[ENA]
¡û
>W1610784567
LOEX01000091
Alphaproteobacteria
Sphingomonadales bacterium BRH_c42 [LOEX]
9425
9510
+
Tyr
GTA
[ENA]
¡û
>W1610911400
LSHI01000005
Alphaproteobacteria
Blastomonas sp. CCH9-F3 [LSHI]
74129
74214
+
Tyr
GTA
[ENA]
¡û
>W1610911511
LSHK01000075
Alphaproteobacteria
Blastomonas sp. CCH8-E1 [LSHK]
46482
46397
-
Tyr
GTA
[ENA]
¡û
>W1610911531
LSHL01000053
Alphaproteobacteria
Blastomonas sp. CCH10-E1 [LSHL]
86594
86509
-
Tyr
GTA
[ENA]
¡û
>W1610911590
LSHM01000035
Alphaproteobacteria
Blastomonas sp. CCH9-A1 [LSHM]
122108
122193
+
Tyr
GTA
[ENA]
¡û
>W1610911642
LSHN01000103
Alphaproteobacteria
Blastomonas sp. CCH13-E1 [LSHN]
8094
8009
-
Tyr
GTA
[ENA]
¡û
>W1610911662
LSHO01000032
Alphaproteobacteria
Blastomonas sp. CCH2-E1 [LSHO]
75550
75635
+
Tyr
GTA
[ENA]
¡û
>W1610911801
LSHR01000057
Alphaproteobacteria
Blastomonas sp. CCH3-E3 [LSHR]
76275
76360
+
Tyr
GTA
[ENA]
¡û
>W1610911835
LSHS01000085
Alphaproteobacteria
Blastomonas sp. CCH8-A3 [LSHS]
46367
46282
-
Tyr
GTA
[ENA]
¡û
>W1610911867
LSHT01000036
Alphaproteobacteria
Sphingomonas sp. CCH18-B1 [LSHT]
46351
46266
-
Tyr
GTA
[ENA]
¡û
>W1610911909
LSHU01000024
Alphaproteobacteria
Blastomonas sp. CCH7-E1 [LSHU]
122103
122188
+
Tyr
GTA
[ENA]
¡û
>W1610911972
LSHV01000149
Alphaproteobacteria
Blastomonas sp. CCH15-G10 [LSHV]
74630
74715
+
Tyr
GTA
[ENA]
¡û
>W1610912130
LSHZ01000098
Alphaproteobacteria
Blastomonas sp. CCH4-D12 [LSHZ]
20373
20288
-
Tyr
GTA
[ENA]
¡û
>W1610912766
LSIO01000105
Alphaproteobacteria
Blastomonas sp. CCH5-A3 [LSIO]
107465
107550
+
Tyr
GTA
[ENA]
¡û
>W1610912827
LSIP01001075
Alphaproteobacteria
Erythrobacter donghaensis [LSIP]
4364
4449
+
Tyr
GTA
[ENA]
¡û
>W1610913464
LSJG01000185
Alphaproteobacteria
Porphyrobacter sp. CCH7-A1 [LSJG]
45418
45503
+
Tyr
GTA
[ENA]
¡û
>W1610914366
LSKB01000095
Alphaproteobacteria
Blastomonas sp. CCH11-A4 [LSKB]
74630
74715
+
Tyr
GTA
[ENA]
¡û
>W1610915143
LSKS01000631
Betaproteobacteria
Acidovorax sp. CCH12-A4 [LSKS]
27559
27474
-
Tyr
GTA
[ENA]
¡û
>W1710068556
BCTW01000010
Alphaproteobacteria
Novosphingobium lentum NBRC 107847 [BCTW]
13900
13815
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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