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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.98228 (96 seq.)
>W1711187727
LWPS01000065
Bacillota
Clostridium sp. HMSC19A10 [LWPS]
56027
55943
-
Leu
TAG
[ENA]
¡û
>W1711293917
LZYZ01000005
Bacillota
Clostridium saccharobutylicum [LZYZ]
410490
410574
+
Leu
TAG
[ENA]
¡û
>W1711294004
LZZA01000139
Bacillota
Clostridium saccharobutylicum [LZZA]
85184
85100
-
Leu
TAG
[ENA]
¡û
>W1711579457
MNRT01000021
Bacillota
Clostridium sp. 29_15 [MNRT]
65188
65272
+
Leu
TAG
[ENA]
¡û
>W131001757
AGYK01000019
Bacillota
Clostridium butyricum 60E.3 [AGYK]
44739
44823
+
Leu
TAG
[ENA]
¡û
>W131110793
APKZ01000044
Bacillota
Clostridium butyricum DKU-01 [APKZ]
8700
8616
-
Leu
TAG
[ENA]
¡û
>C171021793
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
81114
81030
-
Leu
TAG
-
¡û
>C171045577
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
343569
343653
+
Leu
TAG
-
¡û
>C171045728
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
343569
343653
+
Leu
TAG
-
¡û
>C171045897
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
354554
354638
+
Leu
TAG
-
¡û
>C171045982
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
343569
343653
+
Leu
TAG
-
¡û
>C171047538
CP016332
Bacillota
Clostridium butyricum TK520 [CP016332, CP016333]
329813
329897
+
Leu
TAG
-
¡û
>WENV180094994
MTBK01043108
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
286
370
+
Leu
TAG
[ENA]
¢þ
>WENV180159928
OAVB01032475
[OAVB] human gut metagenome; faeces
225
141
-
Leu
TAG
[ENA]
¢þ
>WENV180278638
OBHX01006423
[OBHX] metagenome; feces
1627
1711
+
Leu
TAG
[ENA]
¢þ
>WENV180315365
OBKH01075832
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
60
144
+
Leu
TAG
[ENA]
¢þ
>WENV180333795
OBLF01002117
[OBLF] metagenome; feces
14063
13979
-
Leu
TAG
[ENA]
¢þ
>WENV180347670
OBLO01000891
[OBLO] metagenome; feces
23097
23013
-
Leu
TAG
[ENA]
¢þ
>WENV180413518
OBVB01003457
[OBVB] human gut metagenome; faeces
2018
1934
-
Leu
TAG
[ENA]
¢þ
>WENV180494843
OCAA01001370
[OCAA] human gut metagenome; faeces
5806
5890
+
Leu
TAG
[ENA]
¢þ
>WENV180599499
OCPP01001366
[OCPP] human gut metagenome; faeces
7082
6998
-
Leu
TAG
[ENA]
¢þ
>WENV180621540
OCQC01002400
[OCQC] human gut metagenome; human gut
4985
4901
-
Leu
TAG
[ENA]
¢þ
>W08001345
ABDT01000094
Bacillota
Clostridium butyricum 5521 [ABDT]
134463
134547
+
Leu
TAG
[ENA]
¡û
>WENV181553036
OGIQ01000935
[OGIQ] metagenome; Human gut stool
273
357
+
Leu
TAG
[ENA]
¢þ
>WENV181555108
OGIT01000023
[OGIT] metagenome; Human gut stool
82783
82867
+
Leu
TAG
[ENA]
¢þ
>WENV181555981
OGIU01001374
[OGIU] metagenome; Human gut stool
10648
10564
-
Leu
TAG
[ENA]
¢þ
>WENV181659361
OGOE01008121
[OGOE] human gut metagenome; faeces
2585
2669
+
Leu
TAG
[ENA]
¢þ
>WENV181676243
OGOP01051323
[OGOP] human gut metagenome; faeces
784
700
-
Leu
TAG
[ENA]
¢þ
>WENV181706986
OGPL01004914
[OGPL] human gut metagenome; faeces
3760
3844
+
Leu
TAG
[ENA]
¢þ
>WENV181798333
OGRV01000031
[OGRV] human gut metagenome; fecal sample 3 from infant 4
30868
30952
+
Leu
TAG
[ENA]
¢þ
>WENV181798908
OGRX01001392
[OGRX] human gut metagenome; fecal sample 2 from infant 8
400
484
+
Leu
TAG
[ENA]
¢þ
>WENV181801279
OGSB01000035
[OGSB] human gut metagenome; fecal sample 5 from infant 3
134283
134367
+
Leu
TAG
[ENA]
¢þ
>WENV181801840
OGSC01000160
[OGSC] human gut metagenome; fecal sample 8 from infant 5
399
483
+
Leu
TAG
[ENA]
¢þ
>WENV181805155
OGSH01001003
[OGSH] human gut metagenome; fecal sample 5 from infant 6
5179
5095
-
Leu
TAG
[ENA]
¢þ
>WENV181805395
OGSI01000334
[OGSI] human gut metagenome; fecal sample 4 from infant 8
9064
9148
+
Leu
TAG
[ENA]
¢þ
>WENV181805656
OGSJ01000186
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
398
482
+
Leu
TAG
[ENA]
¢þ
>WENV181807785
OGSQ01000134
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
40926
40842
-
Leu
TAG
[ENA]
¢þ
>WENV181809349
OGST01000017
[OGST] human gut metagenome; fecal sample 7 from infant 6
117177
117261
+
Leu
TAG
[ENA]
¢þ
>WENV181810698
OGSV01001220
[OGSV] human gut metagenome; fecal sample 4 from infant 3
2525
2441
-
Leu
TAG
[ENA]
¢þ
>WENV181811118
OGSY01000008
[OGSY] human gut metagenome; fecal sample 5 from infant 8
117177
117261
+
Leu
TAG
[ENA]
¢þ
>WENV181813717
OGTD01000275
[OGTD] human gut metagenome; fecal sample 1 from infant 3
7227
7311
+
Leu
TAG
[ENA]
¢þ
>WENV181814369
OGTG01000053
[OGTG] human gut metagenome; fecal sample 1 from infant 4
30868
30952
+
Leu
TAG
[ENA]
¢þ
>WENV181815044
OGTI01000174
[OGTI] human gut metagenome; fecal sample 5 from infant 1
4866
4950
+
Leu
TAG
[ENA]
¢þ
>WENV181817587
OGTN01001129
[OGTN] human gut metagenome; fecal sample 5 from infant 4
327
411
+
Leu
TAG
[ENA]
¢þ
>WENV181818223
OGTS01000037
[OGTS] human gut metagenome; fecal sample 4 from infant 4
30868
30952
+
Leu
TAG
[ENA]
¢þ
>WENV181818625
OGTT01000519
[OGTT] human gut metagenome; fecal sample 6 from infant 8
8954
9038
+
Leu
TAG
[ENA]
¢þ
>WENV181818868
OGTU01000057
[OGTU] human gut metagenome; fecal sample 6 from infant 4
68142
68058
-
Leu
TAG
[ENA]
¢þ
>WENV181822997
OGUH01002389
[OGUH] human gut metagenome; fecal sample 3 from infant 3
26
110
+
Leu
TAG
[ENA]
¢þ
>WENV181981655
OHAG01004425
[OHAG] human gut metagenome; faeces
419
335
-
Leu
TAG
[ENA]
¢þ
>W141206231
AZLX01000021
Bacillota
Clostridium butyricum DORA_1 [AZLX]
73400
73316
-
Leu
TAG
[ENA]
¡û
>W141259005
CBYK010000006
Bacillota
Clostridium butyricum [CBYK]
105324
105240
-
Leu
TAG
[ENA]
¡û
>WENV182874970
OKRW01079373
[OKRW] human gut metagenome; faeces
6
90
+
Leu
TAG
[ENA]
¢þ
>WENV182944825
OKVJ01002032
[OKVJ] human gut metagenome; human gut
4582
4666
+
Leu
TAG
[ENA]
¢þ
>WENV183132580
OLOB01003716
[OLOB] human gut metagenome; faeces
6901
6985
+
Leu
TAG
[ENA]
¢þ
>WENV183170195
OLPA01044522
[OLPA] human gut metagenome; faeces
161
245
+
Leu
TAG
[ENA]
¢þ
>WENV183172657
OLPC01038087
[OLPC] human gut metagenome; faeces
68
152
+
Leu
TAG
[ENA]
¢þ
>WENV183187822
OLPO01090553
[OLPO] human gut metagenome; faeces
153
237
+
Leu
TAG
[ENA]
¢þ
>WENV183197396
OLPU01039453
[OLPU] human gut metagenome; faeces
903
819
-
Leu
TAG
[ENA]
¢þ
>WENV183227908
OLQQ01004459
[OLQQ] human gut metagenome; faeces
3016
3100
+
Leu
TAG
[ENA]
¢þ
>WENV183234009
OLQV01009036
[OLQV] human gut metagenome; faeces
920
1004
+
Leu
TAG
[ENA]
¢þ
>WENV183241034
OLRA01037929
[OLRA] human gut metagenome; faeces
1375
1459
+
Leu
TAG
[ENA]
¢þ
>WENV183260600
OLRP01001278
[OLRP] human gut metagenome; faeces
10743
10827
+
Leu
TAG
[ENA]
¢þ
>WENV183323243
OLVX01030043
[OLVX] human gut metagenome; faeces
486
402
-
Leu
TAG
[ENA]
¢þ
>WENV183327466
OLWA01000738
[OLWA] human gut metagenome; faeces
26955
26871
-
Leu
TAG
[ENA]
¢þ
>WENV183506493
OMGY01001039
[OMGY] human gut metagenome; human gut
18763
18847
+
Leu
TAG
[ENA]
¢þ
>WENV183520172
OMNT01006694
[OMNT] human gut metagenome; faeces
6220
6304
+
Leu
TAG
[ENA]
¢þ
>WENV183589475
OOCW01001062
[OOCW] human gut metagenome; human gut
1832
1748
-
Leu
TAG
[ENA]
¢þ
>WENV183596010
OODD01005455
[OODD] human gut metagenome; human gut
1630
1714
+
Leu
TAG
[ENA]
¢þ
>WENV183751182
PPYE01004506
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1005
921
-
Leu
TAG
[ENA]
¢þ
>WENV183780953
PPYF01188692
[PPYF] human gut metagenome; stool from patient with Crohn's disease
4169
4085
-
Leu
TAG
[ENA]
¢þ
>WENV170660399
JXWT01093932
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
366
282
-
Leu
TAG
[ENA]
¢þ
>C181047852
CP020953
Bacillota
Clostridium drakei SL1 [CP020953]
4906626
4906542
-
Leu
TAG
-
¡û
>C181176733
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
1394462
1394546
+
Leu
TAG
-
¡û
>C181176739
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
1395071
1395155
+
Leu
TAG
-
¡û
>C191171157
CP039702
Bacillota
Clostridium butyricum [CP039702]
388632
388716
+
Leu
TAG
-
¡û
>C191171282
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
2140589
2140673
+
Leu
TAG
-
¡û
>W141565609
JIBU02000045
Bacillota
Clostridium drakei [JIBU]
75698
75782
+
Leu
TAG
[ENA]
¡û
>W09132828
ACOM01000004
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
552408
552324
-
Leu
TAG
[ENA]
¡û
>C141007589
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
343570
343654
+
Leu
TAG
[Ensembl]
¡û
>W1910637981
LRDH01000104
Bacillota
Clostridium butyricum 300064 [LRDH]
58901
58817
-
Leu
TAG
[ENA]
¡û
>W1810250564
PQCS01000178
Bacillota
Clostridium sp. 3-3 [PQCS]
5260
5344
+
Leu
TAG
[ENA]
¡û
>W1810805936
QRUG01000006
Bacillota
Clostridium butyricum AF25-25 [QRUG]
80154
80070
-
Leu
TAG
[ENA]
¡û
>W1511350216
JRMA01000015
Bacillota
Clostridium butyricum INCQS635 [JRMA]
94188
94272
+
Leu
TAG
[ENA]
¡û
>W1511365604
JSEG01000021
Bacillota
Clostridium butyricum NOR 33234 [JSEG]
82995
82911
-
Leu
TAG
[ENA]
¡û
>W1511501389
JXBT01000001
Bacillota
Clostridium butyricum HM-68 [JXBT]
3451341
3451257
-
Leu
TAG
[ENA]
¡û
>W1511554754
JZWE01000051
Bacillota
Clostridium sp. IBUN22A [JZWE]
8782
8698
-
Leu
TAG
[ENA]
¡û
>W1511554825
JZWF01000030
Bacillota
Clostridium sp. IBUN125C [JZWF]
125270
125354
+
Leu
TAG
[ENA]
¡û
>W1511554861
JZWG01000025
Bacillota
Clostridium sp. IBUN13A [JZWG]
84897
84813
-
Leu
TAG
[ENA]
¡û
>W1511554975
JZWH01000070
Bacillota
Clostridium sp. IBUN62F [JZWH]
125246
125330
+
Leu
TAG
[ENA]
¡û
>C161054123
CP013252
Bacillota
Clostridium butyricum KNU-L09 [CP013252, CP013489]
640573
640657
+
Leu
TAG
-
¡û
>C161055876
CP013352
Bacillota
Clostridium butyricum JKY6D1 [CP013352, CP013353]
328308
328392
+
Leu
TAG
-
¡û
>C161076400
CP014704
Bacillota
Clostridium butyricum TOA [CP014704, CP014705]
313570
313654
+
Leu
TAG
-
¡û
>W1610030599
AYXL01000077
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
803
719
-
Leu
TAG
[ENA]
¡û
>W1610627663
LIDW01000032
Bacillota
Clostridium butyricum [LIDW]
22269
22185
-
Leu
TAG
[ENA]
¡û
>W1710027722
AYXL01000077
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
803
719
-
Leu
TAG
[ENA]
¡û
>W1710758790
LIDW01000032
Bacillota
Clostridium butyricum [LIDW]
22269
22185
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK