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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.98810 (35 seq.)
>W131250016
CAUI01000004
Bacillota
Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 [CAUI]
1845
1929
+
Tyr
GTA
[ENA]
¡û
>WENV170674912
LCWY01022200
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
272
188
-
Tyr
GTA
[ENA]
¢þ
>WENV170674919
LCWY01023824
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
298
213
-
Tyr
GTA
[ENA]
¢þ
>WENV170675342
LCWZ01043155
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
243
159
-
Tyr
GTA
[ENA]
¢þ
>C191094439
CP032760
Bacillota
Halocella sp. SP3-1 [CP032760]
2758525
2758609
+
Tyr
GTA
-
¡û
>C191094465
CP032760
Bacillota
Halocella sp. SP3-1 [CP032760]
99245
99161
-
Tyr
GTA
-
¡û
>W1810486199
QAXS01000004
Bacillota
Halanaerobium saccharolyticum WC1 [QAXS]
57009
56925
-
Tyr
GTA
[ENA]
¡û
>W1810486228
QAXS01000031
Bacillota
Halanaerobium saccharolyticum WC1 [QAXS]
34526
34442
-
Tyr
GTA
[ENA]
¡û
>W1810503779
QBKJ01000001
Bacillota
Halanaerobium congolense WG5_pb [QBKJ]
273781
273697
-
Tyr
GTA
[ENA]
¡û
>W1810628449
QICM01000030
Bacillota
Halanaerobium congolense MSL28 [QICM]
31715
31631
-
Tyr
GTA
[ENA]
¡û
>W1810694636
QLME01000003
Bacillota
Halanaerobium saccharolyticum MSL 17.2 [QLME]
155809
155725
-
Tyr
GTA
[ENA]
¡û
>W1810694674
QLME01000030
Bacillota
Halanaerobium saccharolyticum MSL 17.2 [QLME]
32948
32864
-
Tyr
GTA
[ENA]
¡û
>W1810759106
QPJE01000001
Bacillota
Halanaerobium sp. MA284_MarDTE_T2 [QPJE]
188756
188840
+
Tyr
GTA
[ENA]
¡û
>W1810759144
QPJE01000038
Bacillota
Halanaerobium sp. MA284_MarDTE_T2 [QPJE]
14793
14709
-
Tyr
GTA
[ENA]
¡û
>W1810759172
QPJF01000016
Bacillota
Halanaerobium sp. ST460_2HS_T2 [QPJF]
29224
29308
+
Tyr
GTA
[ENA]
¡û
>W1810759192
QPJF01000026
Bacillota
Halanaerobium sp. ST460_2HS_T2 [QPJF]
32786
32702
-
Tyr
GTA
[ENA]
¡û
>W1810759554
QPJN01000001
Bacillota
Halanaerobium sp. DL-01 [QPJN]
134810
134894
+
Tyr
GTA
[ENA]
¡û
>W1810759590
QPJN01000037
Bacillota
Halanaerobium sp. DL-01 [QPJN]
14792
14708
-
Tyr
GTA
[ENA]
¡û
>C11110024
CP002304
Bacillota
Halanaerobium hydrogeniformans sapolanicus [CP002304]
1453946
1454030
+
Tyr
GTA
[Ensembl]
¡û
>C11110040
CP002304
Bacillota
Halanaerobium hydrogeniformans sapolanicus [CP002304]
2188103
2188019
-
Tyr
GTA
[Ensembl]
¡û
>C11110599
CP002175
Bacillota
Halanaerobium praevalens DSM 2228 [CP002175]
1909955
1909871
-
Tyr
GTA
[Ensembl]
¡û
>W1710511591
FMYT01000029
Bacillota
Halanaerobium congolense [FMYT]
1554
1638
+
Tyr
GTA
[ENA]
¡û
>W1710514996
FNBJ01000003
Bacillota
Halanaerobium congolense [FNBJ]
32017
31933
-
Tyr
GTA
[ENA]
¡û
>W1710517337
FNDF01000047
Bacillota
Halanaerobium congolense [FNDF]
1533
1617
+
Tyr
GTA
[ENA]
¡û
>W1710518891
FNEH01000035
Bacillota
Halanaerobium congolense [FNEH]
19752
19668
-
Tyr
GTA
[ENA]
¡û
>W1710521050
FNGB01000035
Bacillota
Halanaerobium congolense [FNGB]
1385
1469
+
Tyr
GTA
[ENA]
¡û
>W1710522742
FNHK01000039
Bacillota
Halanaerobium congolense [FNHK]
1551
1635
+
Tyr
GTA
[ENA]
¡û
>W1710553049
FOHG01000003
Bacillota
Halanaerobium congolense [FOHG]
31783
31699
-
Tyr
GTA
[ENA]
¡û
>W1710553333
FOHM01000036
Bacillota
Halanaerobium congolense [FOHM]
19730
19646
-
Tyr
GTA
[ENA]
¡û
>W1710568124
FOTI01000002
Bacillota
Halanaerobium salsuginis [FOTI]
45746
45830
+
Tyr
GTA
[ENA]
¡û
>W1710568155
FOTI01000033
Bacillota
Halanaerobium salsuginis [FOTI]
31548
31464
-
Tyr
GTA
[ENA]
¡û
>W1710572823
FOWY01000004
Bacillota
Halanaerobium congolense [FOWY]
32030
31946
-
Tyr
GTA
[ENA]
¡û
>W1710592942
FRCV01000028
Bacillota
Halanaerobium congolense [FRCV]
1549
1633
+
Tyr
GTA
[ENA]
¡û
>W1710597256
FTNC01000001
Bacillota
Halanaerobium kushneri [FTNC]
208475
208559
+
Tyr
GTA
[ENA]
¡û
>W1710597298
FTNC01000036
Bacillota
Halanaerobium kushneri [FTNC]
18259
18175
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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