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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.99319 (87 seq.)
>W1710911642
LNRI01000005
Gammaproteobacteria
Vibrio sp. CL1 wodanis [LNRI]
81906
81822
-
Leu
GAG
[ENA]
¡û
>W1710911851
LNRK01000005
Gammaproteobacteria
Vibrio sp. CL4 wodanis [LNRK]
96212
96128
-
Leu
GAG
[ENA]
¡û
>W1710911966
LNRL01000004
Gammaproteobacteria
Vibrio sp. CL5 wodanis [LNRL]
95925
95841
-
Leu
GAG
[ENA]
¡û
>W1710912221
LNRN01000003
Gammaproteobacteria
Vibrio sp. CL7 wodanis [LNRN]
81938
81854
-
Leu
GAG
[ENA]
¡û
>W1711114004
LTYU01000040
Gammaproteobacteria
Aliivibrio fischeri [LTYU]
69821
69905
+
Leu
GAG
[ENA]
¡û
>W1711114024
LTYV01000011
Gammaproteobacteria
Aliivibrio fischeri [LTYV]
69609
69693
+
Leu
GAG
[ENA]
¡û
>W1711114076
LTYW01000036
Gammaproteobacteria
Aliivibrio fischeri [LTYW]
160506
160590
+
Leu
GAG
[ENA]
¡û
>W1711114113
LTYX01000023
Gammaproteobacteria
Aliivibrio fischeri [LTYX]
63578
63494
-
Leu
GAG
[ENA]
¡û
>W1711114162
LTYY01000049
Gammaproteobacteria
Aliivibrio fischeri [LTYY]
69835
69919
+
Leu
GAG
[ENA]
¡û
>W1711114180
LTYZ01000002
Gammaproteobacteria
Aliivibrio fischeri [LTYZ]
63584
63500
-
Leu
GAG
[ENA]
¡û
>W1711114225
LTZA01000024
Gammaproteobacteria
Aliivibrio fischeri [LTZA]
160674
160758
+
Leu
GAG
[ENA]
¡û
>W1711114248
LTZB01000007
Gammaproteobacteria
Aliivibrio fischeri [LTZB]
69828
69912
+
Leu
GAG
[ENA]
¡û
>W1711114299
LTZC01000041
Gammaproteobacteria
Aliivibrio fischeri [LTZC]
160506
160590
+
Leu
GAG
[ENA]
¡û
>W1711114355
LTZD01000024
Gammaproteobacteria
Aliivibrio fischeri [LTZD]
63577
63493
-
Leu
GAG
[ENA]
¡û
>W1711114404
LTZE01000021
Gammaproteobacteria
Aliivibrio fischeri [LTZE]
63579
63495
-
Leu
GAG
[ENA]
¡û
>W1711114441
LTZF01000026
Gammaproteobacteria
Aliivibrio fischeri [LTZF]
161309
161393
+
Leu
GAG
[ENA]
¡û
>W1711303152
MAJN01000003
Gammaproteobacteria
Aliivibrio fischeri [MAJN]
66571
66655
+
Leu
GAG
[ENA]
¡û
>W1711303264
MAJO01000035
Gammaproteobacteria
Aliivibrio fischeri [MAJO]
50011
50095
+
Leu
GAG
[ENA]
¡û
>W1711303297
MAJP01000006
Gammaproteobacteria
Aliivibrio fischeri [MAJP]
39914
39830
-
Leu
GAG
[ENA]
¡û
>W1711303378
MAJQ01000001
Gammaproteobacteria
Aliivibrio fischeri [MAJQ]
10604
10520
-
Leu
GAG
[ENA]
¡û
>W1711303518
MAJR01000128
Gammaproteobacteria
Aliivibrio fischeri [MAJR]
40034
39950
-
Leu
GAG
[ENA]
¡û
>W1711303968
MAJX01000047
Gammaproteobacteria
Aliivibrio fischeri [MAJX]
39878
39794
-
Leu
GAG
[ENA]
¡û
>W1711304058
MAJY01000040
Gammaproteobacteria
Aliivibrio fischeri [MAJY]
45989
46073
+
Leu
GAG
[ENA]
¡û
>W1711304098
MAJZ01000856
Gammaproteobacteria
Vibrio genomosp. F10 [MAJZ]
20839
20923
+
Leu
GAG
[ENA]
¡û
>W1711341945
MCGJ01000031
Gammaproteobacteria
Aliivibrio fischeri [MCGJ]
71218
71302
+
Leu
GAG
[ENA]
¡û
>W1711342050
MCGK01000044
Gammaproteobacteria
Aliivibrio fischeri [MCGK]
26715
26631
-
Leu
GAG
[ENA]
¡û
>W131228494
AUFZ01000014
Gammaproteobacteria
Vibrio litoralis DSM 17657 [AUFZ]
324879
324795
-
Leu
GAG
[ENA]
¡û
>C026329
CP000020
Gammaproteobacteria
Aliivibrio fischeri ES114 [CP000020, CP000021]
519278
519362
+
Leu
GAG
[Ensembl]
¡û
>WENV170012506
ASRK01010381
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
110
26
-
Leu
GAG
[ENA]
¢þ
>WENV170646417
JQGR01002915
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
802
886
+
Leu
GAG
[ENA]
¢þ
>WENV170704220
LLEJ01000129
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
9416
9332
-
Leu
GAG
[ENA]
¢þ
>C181005214
AP018680
Gammaproteobacteria
Vibrio casei DSM 22364 [AP018680, AP018681]
2007791
2007707
-
Leu
GAG
-
¡û
>C181005276
AP018685
Gammaproteobacteria
Vibrio rumoiensis FERM P-14531 [AP018685, AP018686]
787221
787305
+
Leu
GAG
-
¡û
>C181227334
LT960611
Gammaproteobacteria
Vibrio tapetis subsp. tapetis [LT960611]
1656627
1656543
-
Leu
GAG
-
¡û
>C191004116
AP018689
Gammaproteobacteria
Vibrio aphrogenes CA-1004 [AP018689, AP018690]
1845755
1845671
-
Leu
GAG
-
¡û
>W09107355
ABIH01000015
Gammaproteobacteria
Aliivibrio fischeri MJ11 [ABIH]
32074
32158
+
Leu
GAG
[ENA]
¡û
>W1910377853
FUKS01000046
Gammaproteobacteria
Vibrio casei JB196 [FUKS]
186234
186150
-
Leu
GAG
[ENA]
¡û
>W1910678498
MCUT01000055
Gammaproteobacteria
Vibrio sp. 10N.286.49.C2 [MCUT]
29836
29752
-
Leu
GAG
[ENA]
¡û
>W1910678533
MCUT01000083
Gammaproteobacteria
Vibrio sp. 10N.286.49.C2 [MCUT]
209919
210003
+
Leu
GAG
[ENA]
¡û
>W1910678707
MCUW01000004
Gammaproteobacteria
Vibrio sp. 10N.286.49.B1 [MCUW]
191717
191633
-
Leu
GAG
[ENA]
¡û
>W1910678718
MCUW01000007
Gammaproteobacteria
Vibrio sp. 10N.286.49.B1 [MCUW]
199182
199266
+
Leu
GAG
[ENA]
¡û
>W1910679459
MCVF01000403
Gammaproteobacteria
Vibrio sp. 10N.286.48.B7 [MCVF]
28072
27988
-
Leu
GAG
[ENA]
¡û
>W1910679461
MCVF01000412
Gammaproteobacteria
Vibrio sp. 10N.286.48.B7 [MCVF]
28169
28085
-
Leu
GAG
[ENA]
¡û
>W1910682695
MCWZ01000014
Gammaproteobacteria
Vibrio sp. 10N.261.55.A7 [MCWZ]
58716
58800
+
Leu
GAG
[ENA]
¡û
>W1910796674
MSCO01000001
Gammaproteobacteria
Aliivibrio sifiae ATCC 33715 [MSCO]
380836
380920
+
Leu
GAG
[ENA]
¡û
>W1910796759
MSCP01000001
Gammaproteobacteria
Aliivibrio sifiae NBRC 105001 [MSCP]
2134028
2133944
-
Leu
GAG
[ENA]
¡û
>W1810239667
PPSN01000004
Gammaproteobacteria
Vibrio gangliei SZDIS-1 [PPSN]
109965
110049
+
Leu
GAG
[ENA]
¡û
>W1810756984
QPGL01000001
Gammaproteobacteria
Vibrio casei JB196 [QPGL]
749123
749207
+
Leu
GAG
[ENA]
¡û
>C151102993
LN554846
Gammaproteobacteria
Aliivibrio wodanis [LN554846, LN554847]
573999
574083
+
Leu
GAG
[Ensembl]
¡û
>W1510646320
CVOI01000004
Gammaproteobacteria
Aliivibrio fischeri 5LC [CVOI]
162404
162488
+
Leu
GAG
[ENA]
¡û
>W1511624198
LCYF01000009
Gammaproteobacteria
Aliivibrio fischeri VCW2E2 [LCYF]
50518
50602
+
Leu
GAG
[ENA]
¡û
>W1610048547
BBEE01000016
Gammaproteobacteria
Aliivibrio fischeri JCM 18803 [BBEE]
69712
69796
+
Leu
GAG
[ENA]
¡û
>W121032902
AHIH01000002
Gammaproteobacteria
Aliivibrio fischeri SR5 [AHIH]
162313
162397
+
Leu
GAG
[ENA]
¡û
>W121071921
AJYI01000017
Gammaproteobacteria
Aliivibrio fischeri ZF-211 [AJYI]
50223
50307
+
Leu
GAG
[ENA]
¡û
>W121071954
AJYK01000007
Gammaproteobacteria
Vibrio rumoiensis 1S-45 [AJYK]
29397
29481
+
Leu
GAG
[ENA]
¡û
>W121072108
AJYN01000183
Gammaproteobacteria
Vibrio genomosp. F10 F10 str. 9ZB36 [AJYN]
108551
108635
+
Leu
GAG
[ENA]
¡û
>W121072112
AJYO01000087
Gammaproteobacteria
Vibrio genomosp. F10 F10 str. 9ZD137 [AJYO]
3840
3924
+
Leu
GAG
[ENA]
¡û
>W121072161
AJYQ01000127
Gammaproteobacteria
Vibrio genomosp. F10 F10 str. ZF-129 [AJYQ]
65375
65459
+
Leu
GAG
[ENA]
¡û
>W1610770001
LNRI01000005
Gammaproteobacteria
Vibrio sp. CL1 wodanis [LNRI]
81906
81822
-
Leu
GAG
[ENA]
¡û
>W1610770210
LNRK01000005
Gammaproteobacteria
Vibrio sp. CL4 wodanis [LNRK]
96212
96128
-
Leu
GAG
[ENA]
¡û
>W1610770325
LNRL01000004
Gammaproteobacteria
Vibrio sp. CL5 wodanis [LNRL]
95925
95841
-
Leu
GAG
[ENA]
¡û
>W1610770580
LNRN01000003
Gammaproteobacteria
Vibrio sp. CL7 wodanis [LNRN]
81938
81854
-
Leu
GAG
[ENA]
¡û
>W1610926701
LTYU01000040
Gammaproteobacteria
Aliivibrio fischeri [LTYU]
69821
69905
+
Leu
GAG
[ENA]
¡û
>W1610926721
LTYV01000011
Gammaproteobacteria
Aliivibrio fischeri [LTYV]
69609
69693
+
Leu
GAG
[ENA]
¡û
>W1610926773
LTYW01000036
Gammaproteobacteria
Aliivibrio fischeri [LTYW]
160506
160590
+
Leu
GAG
[ENA]
¡û
>W1610926810
LTYX01000023
Gammaproteobacteria
Aliivibrio fischeri [LTYX]
63578
63494
-
Leu
GAG
[ENA]
¡û
>W1610926859
LTYY01000049
Gammaproteobacteria
Aliivibrio fischeri [LTYY]
69835
69919
+
Leu
GAG
[ENA]
¡û
>W1610926877
LTYZ01000002
Gammaproteobacteria
Aliivibrio fischeri [LTYZ]
63584
63500
-
Leu
GAG
[ENA]
¡û
>W1610926922
LTZA01000024
Gammaproteobacteria
Aliivibrio fischeri [LTZA]
160674
160758
+
Leu
GAG
[ENA]
¡û
>W1610926945
LTZB01000007
Gammaproteobacteria
Aliivibrio fischeri [LTZB]
69828
69912
+
Leu
GAG
[ENA]
¡û
>W1610926996
LTZC01000041
Gammaproteobacteria
Aliivibrio fischeri [LTZC]
160506
160590
+
Leu
GAG
[ENA]
¡û
>W1610927052
LTZD01000024
Gammaproteobacteria
Aliivibrio fischeri [LTZD]
63577
63493
-
Leu
GAG
[ENA]
¡û
>W1610927101
LTZE01000021
Gammaproteobacteria
Aliivibrio fischeri [LTZE]
63579
63495
-
Leu
GAG
[ENA]
¡û
>W1610927138
LTZF01000026
Gammaproteobacteria
Aliivibrio fischeri [LTZF]
161309
161393
+
Leu
GAG
[ENA]
¡û
>W1611053352
MAJN01000003
Gammaproteobacteria
Aliivibrio fischeri [MAJN]
66571
66655
+
Leu
GAG
[ENA]
¡û
>W1611053464
MAJO01000035
Gammaproteobacteria
Aliivibrio fischeri [MAJO]
50011
50095
+
Leu
GAG
[ENA]
¡û
>W1611053497
MAJP01000006
Gammaproteobacteria
Aliivibrio fischeri [MAJP]
39914
39830
-
Leu
GAG
[ENA]
¡û
>W1611053578
MAJQ01000001
Gammaproteobacteria
Aliivibrio fischeri [MAJQ]
10604
10520
-
Leu
GAG
[ENA]
¡û
>W1611053718
MAJR01000128
Gammaproteobacteria
Aliivibrio fischeri [MAJR]
40034
39950
-
Leu
GAG
[ENA]
¡û
>W1611054168
MAJX01000047
Gammaproteobacteria
Aliivibrio fischeri [MAJX]
39878
39794
-
Leu
GAG
[ENA]
¡û
>W1611054258
MAJY01000040
Gammaproteobacteria
Aliivibrio fischeri [MAJY]
45989
46073
+
Leu
GAG
[ENA]
¡û
>W1611054298
MAJZ01000856
Gammaproteobacteria
Vibrio genomosp. F10 [MAJZ]
20839
20923
+
Leu
GAG
[ENA]
¡û
>W1710045057
BBEE01000016
Gammaproteobacteria
Aliivibrio fischeri JCM 18803 [BBEE]
69712
69796
+
Leu
GAG
[ENA]
¡û
>W1710082198
BDGR01000002
Gammaproteobacteria
Vibrio aphrogenes CA-1004 [BDGR]
1666279
1666363
+
Leu
GAG
[ENA]
¡û
>W1710087594
BDSC01000001
Gammaproteobacteria
Vibrio algivorus [BDSC]
376293
376377
+
Leu
GAG
[ENA]
¡û
>W1710087708
BDSD01000052
Gammaproteobacteria
Vibrio casei [BDSD]
39996
40080
+
Leu
GAG
[ENA]
¡û
>W1710087739
BDSE01000001
Gammaproteobacteria
Vibrio rumoiensis [BDSE]
246065
245981
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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