This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.99445 (30 seq.)
>W1711751214
MUNO01000022
Betaproteobacteria
Polaromonas sp. A23 [MUNO]
156537
156450
-
Ser
CGA
[ENA]
¡û
>C017310
CP000529
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [CP000529]
3532015
3531928
-
Ser
CGA
[Ensembl]
¡û
>C018611
CP000267
Betaproteobacteria
Rhodoferax ferrireducens T118 DSM 15236 [CP000267]
3591461
3591548
+
Ser
CGA
[Ensembl]
¡û
>WENV180022078
FTFO01000118
[FTFO] metagenome; soil
87
1
-
Ser
CGA
[ENA]
¡û
>w008210
AAJK01000001
Betaproteobacteria
Rhodoferax ferrireducens DSM 15236 [AAJK]
212720
212636
-
Ser
CGA
[ENA]
¡û
>WENV181364926
OFPG01000046
[OFPG] sediment metagenome; Lake sediment
9365
9452
+
Ser
CGA
[ENA]
¡û
>W141266009
CCJP01000005
Betaproteobacteria
Polaromonas sp. CG9_12 CJ2 [CCJP]
1010547
1010460
-
Ser
CGA
[ENA]
¡û
>WENV170559352
CXWL01120169
[CXWL] groundwater metagenome; biofilm material
602
689
+
Ser
CGA
[ENA]
¡û
>WENV170559372
CXWL01120660
[CXWL] groundwater metagenome; biofilm material
411
498
+
Ser
CGA
[ENA]
¡û
>WENV170559684
CXWL01137166
[CXWL] groundwater metagenome; biofilm material
2372
2285
-
Ser
CGA
[ENA]
¡û
>WENV170710756
LNFM01002573
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
21980
22067
+
Ser
CGA
[ENA]
¡û
>C191073170
CP031013
Betaproteobacteria
Polaromonas sp. SP1 [CP031013]
2344056
2344143
+
Ser
CGA
-
¡û
>W09104858
AANM01000004
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [AANM]
8319
8406
+
Ser
CGA
[ENA]
¡û
>W141695473
JMDZ01000006
Betaproteobacteria
Polaromonas glacialis [JMDZ]
163255
163168
-
Ser
CGA
[ENA]
¡û
>W1910744119
MHZY01000245
Betaproteobacteria
Rhodoferax sp. RIFCSPLOWO2_12_FULL_60_11 [MHZY]
8942
9029
+
Ser
CGA
[ENA]
¡û
>W1910859523
NBZV01000083
Betaproteobacteria
Polaromonas sp. AER18D-145 [NBZV]
524
437
-
Ser
CGA
[ENA]
¡û
>W1910859549
NBZW01000022
Betaproteobacteria
Polaromonas sp. AET17H-212 [NBZW]
20520
20433
-
Ser
CGA
[ENA]
¡û
>SRA1003450
SRR002326.477613
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
185
98
-
Ser
CGA
[SRA]
>SRA1003989
SRR002328.78347
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
253
166
-
Ser
CGA
[SRA]
>W2010877551
MHZY01000245
Betaproteobacteria
Rhodoferax sp. RIFCSPLOWO2_12_FULL_60_11 [MHZY]
8942
9029
+
Ser
CGA
[ENA]
¡û
>W2010936753
NBZV01000083
Betaproteobacteria
Polaromonas sp. AER18D-145 [NBZV]
524
437
-
Ser
CGA
[ENA]
¡û
>W2010936779
NBZW01000022
Betaproteobacteria
Polaromonas sp. AET17H-212 [NBZW]
20520
20433
-
Ser
CGA
[ENA]
¡û
>C201172334
CP046023
Betaproteobacteria
Polaromonas sp. Pch-P [CP046023]
4158299
4158212
-
Ser
CGA
-
¡û
>C231247373
CP087963
Betaproteobacteria
Polaromonas sp. P1(28)-13 [CP087963]
1575611
1575524
-
Ser
CGA
-
¡û
>C231247381
CP087964
Betaproteobacteria
Polaromonas sp. P1(28)-8 [CP087964]
999436
999523
+
Ser
CGA
-
¡û
>C231247446
CP087965
Betaproteobacteria
Polaromonas sp. P2-4 [CP087965]
1217345
1217258
-
Ser
CGA
-
¡û
>C231247465
CP087966
Betaproteobacteria
Polaromonas sp. P1-6 [CP087966]
4149225
4149312
+
Ser
CGA
-
¡û
>W121084931
AKIV01000133
Betaproteobacteria
Polaromonas sp. CF318 [AKIV]
18914
18827
-
Ser
CGA
[ENA]
¡û
>W1710523407
FNHX01000005
Betaproteobacteria
Polaromonas sp. JS666 [FNHX]
298055
298142
+
Ser
CGA
[ENA]
¡û
>W1710578308
FPBM01000003
Betaproteobacteria
Polaromonas sp. YR568 [FPBM]
198940
198853
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK