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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.99531 (24 seq.)
>W1710923828
LOCK01000048
Bacillota
Desulfitobacterium hafniense [LOCK]
412
328
-
Leu
GAG
[ENA]
¡û
>W1711312283
MASS01000098
Bacillota
Desulfosporosinus sp. BG [MASS]
6336
6420
+
Leu
GAG
[ENA]
¡û
>W131162735
AQZD01000013
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
2862
2778
-
Leu
GAG
[ENA]
¡û
>W131164677
ARAZ01000016
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
14897
14813
-
Leu
GAG
[ENA]
¡û
>W1711926255
NADJ01000003
Bacillota
Desulfosporosinus sp. FKB [NADJ]
6576
6660
+
Leu
GAG
[ENA]
¡û
>W1711932741
NAHZ01000019
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
1215
1131
-
Leu
GAG
[ENA]
¡û
>C007797
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
1723715
1723799
+
Leu
GAG
[Ensembl]
¡û
>WENV180345905
OBLN01010541
[OBLN] sediment metagenome; sediment
710
794
+
Leu
GAG
[ENA]
¢þ
>w002204
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
68357
68271
-
Leu
GAG
[ENA]
¡û
>w002189
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
71508
71422
-
Leu
GAG
[ENA]
¡û
>WENV183673788
ORJL011317769
[ORJL] groundwater metagenome; groundwater
1392
1476
+
Leu
GAG
[ENA]
¢þ
>C09103993
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2798394
2798478
+
Leu
GAG
[Ensembl]
¡û
>C09104008
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2801545
2801629
+
Leu
GAG
[Ensembl]
¡û
>W1511646045
LDZY01000036
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
5336
5420
+
Leu
GAG
[ENA]
¡û
>W11177300
AGAF01000251
Bacillota
Desulfosporosinus sp. OT [AGAF]
1232
1148
-
Leu
GAG
[ENA]
¡û
>C121011434
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
2107416
2107500
+
Leu
GAG
[Ensembl]
¡û
>C121011449
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
2109078
2109162
+
Leu
GAG
[Ensembl]
¡û
>W121010376
AGJE01000018
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
3030
3114
+
Leu
GAG
[ENA]
¡û
>W121007263
AFZX01000024
Bacillota
Desulfitobacterium hafniense DP7 [AFZX]
138
222
+
Leu
GAG
[ENA]
¡û
>W121010554
AGJH01000057
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
550
466
-
Leu
GAG
[ENA]
¡û
>C131003241
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
1740333
1740417
+
Leu
GAG
[Ensembl]
¡û
>C131003257
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
1805795
1805879
+
Leu
GAG
[Ensembl]
¡û
>W1610781429
LOCK01000048
Bacillota
Desulfitobacterium hafniense [LOCK]
412
328
-
Leu
GAG
[ENA]
¡û
>W1710593550
FRDN01000021
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
80766
80682
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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