This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.99533 (66 seq.)
>W1710995912
LQAS01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
2307
2391
+
Leu
CAG
[ENA]
¡û
>W1711710486
MSZN01000003
Betaproteobacteria
Alcaligenes faecalis [MSZN]
189129
189213
+
Leu
CAG
[ENA]
¡û
>W1711710581
MSZP01000001
Betaproteobacteria
Alcaligenes faecalis [MSZP]
194289
194373
+
Leu
CAG
[ENA]
¡û
>W1711710653
MSZQ01000006
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
175335
175419
+
Leu
CAG
[ENA]
¡û
>W1711710720
MSZR01000017
Betaproteobacteria
Alcaligenes faecalis [MSZR]
98679
98763
+
Leu
CAG
[ENA]
¡û
>W1711711864
MTBI01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
714070
714154
+
Leu
CAG
[ENA]
¡û
>W1711711875
MTBI01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
711826
711742
-
Leu
CAG
[ENA]
¡û
>C171115507
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
2353502
2353586
+
Leu
CAG
-
¡û
>C171115527
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
2351260
2351176
-
Leu
CAG
-
¡û
>W131051770
AMXV01000024
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
30164
30248
+
Leu
CAG
[ENA]
¡û
>W131051772
AMXV01000024
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
27919
27835
-
Leu
CAG
[ENA]
¡û
>W131223059
AUBT01000005
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
266074
266158
+
Leu
CAG
[ENA]
¡û
>W131223060
AUBT01000005
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
263830
263746
-
Leu
CAG
[ENA]
¡û
>W141104399
AVOG02000001
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
112817
112901
+
Leu
CAG
[ENA]
¡û
>W141104410
AVOG02000001
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
110572
110488
-
Leu
CAG
[ENA]
¡û
>W141200385
AYXT01000010
Betaproteobacteria
Advenella kashmirensis W13003 [AYXT]
399154
399238
+
Leu
CAG
[ENA]
¡û
>W141237701
BBJQ01000001
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
769048
769132
+
Leu
CAG
[ENA]
¡û
>W141237703
BBJQ01000001
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
766806
766722
-
Leu
CAG
[ENA]
¡û
>WENV170645960
JQGF01002274
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
2252
2336
+
Leu
CAG
[ENA]
¢þ
>WENV170645961
JQGF01002276
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
10
94
+
Leu
CAG
[ENA]
¢þ
>WENV170655469
JTFN01035531
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1073
989
-
Leu
CAG
[ENA]
¢þ
>WENV170655521
JTFN01041094
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
184
100
-
Leu
CAG
[ENA]
¢þ
>WENV170655783
JTFN01073368
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
209
125
-
Leu
CAG
[ENA]
¢þ
>WENV170655850
JTFN01083765
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
714
630
-
Leu
CAG
[ENA]
¢þ
>WENV170656116
JTFO01000231
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
12966
12882
-
Leu
CAG
[ENA]
¢þ
>WENV170656401
JTFO01012934
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1048
1132
+
Leu
CAG
[ENA]
¢þ
>WENV170656402
JTFO01012934
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
2610
2526
-
Leu
CAG
[ENA]
¢þ
>WENV170656885
JTFO01055141
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
651
567
-
Leu
CAG
[ENA]
¢þ
>WENV170657521
JTFO01178083
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
29
113
+
Leu
CAG
[ENA]
¢þ
>WENV170707790
LNAP01034252
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2468
2384
-
Leu
CAG
[ENA]
¢þ
>WENV170708211
LNAP01059084
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
14
98
+
Leu
CAG
[ENA]
¢þ
>WENV170965749
MTEV01001912
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
1228
1144
-
Leu
CAG
[ENA]
¢þ
>C181053225
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
2448409
2448493
+
Leu
CAG
-
¡û
>C181053226
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
2452221
2452305
+
Leu
CAG
-
¡û
>C181053246
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
2449975
2449891
-
Leu
CAG
-
¡û
>C181088584
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
2127429
2127513
+
Leu
CAG
-
¡û
>C181088604
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
2125187
2125103
-
Leu
CAG
-
¡û
>C191085262
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
2663679
2663763
+
Leu
CAG
-
¡û
>C191085263
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
2673445
2673529
+
Leu
CAG
-
¡û
>C191091135
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
1000826
1000910
+
Leu
CAG
-
¡û
>C191091184
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
998581
998497
-
Leu
CAG
-
¡û
>C191124986
CP034433
Betaproteobacteria
Iodobacter ciconiae H11R3 [CP034433]
1350175
1350091
-
Leu
CAG
-
¡û
>C191149621
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
299890
299974
+
Leu
CAG
-
¡û
>C191149670
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
297650
297566
-
Leu
CAG
-
¡û
>W1910891677
NEXS01000003
Betaproteobacteria
Advenella sp. S44 [NEXS]
1375159
1375243
+
Leu
CAG
[ENA]
¡û
>W1810062097
PDNV01000007
Betaproteobacteria
Pollutimonas nitritireducens JR1/69-2-13 [PDNV]
261016
261100
+
Leu
CAG
[ENA]
¡û
>W1810068027
PDZG01000009
Betaproteobacteria
Iodobacter sp. BJB302 [PDZG]
15659
15743
+
Leu
CAG
[ENA]
¡û
>W1810583870
QEXO01000001
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
749619
749703
+
Leu
CAG
[ENA]
¡û
>W1810583875
QEXO01000001
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
747377
747293
-
Leu
CAG
[ENA]
¡û
>C151004942
CP003915
Betaproteobacteria
Advenella mimigardefordensis DPN7 [CP003915]
2580894
2580810
-
Leu
CAG
[Ensembl]
¡û
>W1511321038
JQCV01000007
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
98512
98596
+
Leu
CAG
[ENA]
¡û
>W1511321045
JQCV01000007
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
96268
96184
-
Leu
CAG
[ENA]
¡û
>W1511537445
JZBR01000002
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
356947
357031
+
Leu
CAG
[ENA]
¡û
>W1511537454
JZBR01000002
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
354705
354621
-
Leu
CAG
[ENA]
¡û
>W1511552193
JZUG01000006
Betaproteobacteria
Janthinobacterium sp. B9-8 [JZUG]
196307
196223
-
Leu
CAG
[ENA]
¡û
>W11171206
AFQG01000056
Betaproteobacteria
Advenella kashmirensis WT001 [AFQG]
10951
10867
-
Leu
CAG
[ENA]
¡û
>C121014498
CP003555
Betaproteobacteria
Advenella kashmirensis WT001 [CP003555]
1863636
1863720
+
Leu
CAG
[Ensembl]
¡û
>C161051332
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
356947
357031
+
Leu
CAG
[Ensembl]
¡û
>C161051383
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
354705
354621
-
Leu
CAG
[Ensembl]
¡û
>C161068587
CP014222
Betaproteobacteria
Janthinobacterium sp. B9-8 [CP014222]
1094670
1094586
-
Leu
CAG
[Ensembl]
¡û
>W121091186
AKMR01000001
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
178781
178865
+
Leu
CAG
[ENA]
¡û
>W121091192
AKMR01000001
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
176541
176457
-
Leu
CAG
[ENA]
¡û
>W1610850569
LQAS01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
2307
2391
+
Leu
CAG
[ENA]
¡û
>W1610921520
LSUO01000014
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
354879
354963
+
Leu
CAG
[ENA]
¡û
>W1610921522
LSUO01000014
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
352637
352553
-
Leu
CAG
[ENA]
¡û
>W1710586410
FQXE01000007
Betaproteobacteria
Pollutimonas bauzanensis [FQXE]
59401
59317
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK